Package org.broadinstitute.hellbender.tools.reference
|
84%
successful |
Failed tests
- CompareReferencesIntegrationTest. testFullAlignmentMode[0](src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_chr2multiplesnps.fasta, hg19mini.fasta_hg19mini_chr2multiplesnps.fasta.vcf, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/expected.hg19mini.fasta_hg19mini_chr2multiplesnps.fasta.vcf)
- CompareReferencesIntegrationTest. testFullAlignmentMode[1](src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_chr1indel.fasta, hg19mini.fasta_hg19mini_chr1indel.fasta.vcf, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/expected.testDeletion.hg19mini.fasta_hg19mini_chr1indel.fasta.vcf)
- CompareReferencesIntegrationTest. testFullAlignmentMode[2](src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_chr1indel.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, hg19mini_chr1indel.fasta_hg19mini.fasta.vcf, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/expected.testInsertion.hg19mini_chr1indel.fasta_hg19mini.fasta.vcf)
- CompareReferencesIntegrationTest. testFullAlignmentMode[3](src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_snpsmultiplecontigs.fasta, hg19mini.fasta_hg19mini_snpsmultiplecontigs.fasta.vcf, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/expected.hg19mini.fasta_hg19mini_snpsmultiplecontigs.fasta.vcf)
- CompareReferencesIntegrationTest. testFullAlignmentMode[4](src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_snpandindel.fasta, hg19mini.fasta_hg19mini_snpandindel.fasta.vcf, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/expected.SNPandINDEL.hg19mini.fasta_hg19mini_snpandindel.fasta.vcf)
- CompareReferencesIntegrationTest. testFullAlignmentMode[5](src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini.fasta, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/hg19mini_manySNPsINDELs.fasta, hg19mini.fasta_hg19mini_manySNPsINDELs.fasta.vcf, src/test/resources/org/broadinstitute/hellbender/tools/reference/CompareReferences/expected.hg19mini.fasta_hg19mini_manySNPsINDELs.fasta.vcf)
Classes
| Class | Tests | Failures | Ignored | Duration | Success rate |
|---|---|---|---|---|---|
| CheckReferenceCompatibilityIntegrationTest | 16 | 0 | 0 | 1.020s | 100% |
| CompareReferencesIntegrationTest | 23 | 6 | 0 | 1.442s | 73% |