Class org.broadinstitute.hellbender.engine.FeatureInputUnitTest

all > org.broadinstitute.hellbender.engine > FeatureInputUnitTest
60

tests
0

failures
0

ignored
0.340s

duration
100%

successful

Tests

Test Duration Result
testFeatureCodecCache 0.001s passed
testFeatureCodecCacheSerialization 0.005s passed
testFeatureKeyValuePairSpecified 0.001s passed
testFeatureKeyValuePairsSpecified 0s passed
testFeatureKeyValuePairsSpecifiedSameValue 0s passed
testFeatureNameSpecified 0s passed
testFeatureValuesForNullKey[0](argName:myName,key1=value1,key2=value2, myFile) 0s passed
testFeatureValuesForNullKey[1](argName:myName,null=value, myFile) 0s passed
testFeatureValuesForNullKey[2](argName:myName, myFile) 0.001s passed
testFeatureValuesForNullKey[3](argName, myFile) 0s passed
testFeatureValuesForNullKey[4](argName:null, myFile) 0s passed
testFeatureValuesForNullKey[5](argName:null, null) 0s passed
testGenDbPathAndName[0](argName, gendb://myJsons, gendb://myJsons, gendb:///home/runner/work/gatk/gatk/myJsons) 0s passed
testGenDbPathAndName[10](argName:myname,key1=value1, gendb.hdfs://myJsons, gendb.hdfs://myJsons, myname) 0s passed
testGenDbPathAndName[11](argName:myname//, gendb.hdfs://myJsons, gendb.hdfs://myJsons, myname//) 0s passed
testGenDbPathAndName[1](argName:myname, gendb://myJsons, gendb://myJsons, myname) 0s passed
testGenDbPathAndName[2](argName:myname,key1=value1, gendb://myJsons, gendb://myJsons, myname) 0.001s passed
testGenDbPathAndName[3](argName:myname//, gendb://myJsons, gendb://myJsons, myname//) 0s passed
testGenDbPathAndName[4](argName, gendb.gs://myBucket/myJsons, gendb.gs://myBucket/myJsons, gendb.gs://myBucket/myJsons) 0s passed
testGenDbPathAndName[5](argName:myname, gendb.gs://myJsons, gendb.gs://myJsons, myname) 0.001s passed
testGenDbPathAndName[6](argName:myname,key1=value1, gendb.gs://myJsons, gendb.gs://myJsons, myname) 0s passed
testGenDbPathAndName[7](argName:myname//, gendb.gs://myJsons, gendb.gs://myJsons, myname//) 0s passed
testGenDbPathAndName[8](argName, gendb.hdfs://localhost/myJsons, gendb.hdfs://localhost/myJsons, gendb.hdfs://localhost/myJsons) 0.001s passed
testGenDbPathAndName[9](argName:myname, gendb.hdfs://myJsons, gendb.hdfs://myJsons, myname) 0s passed
testHasUserSuppliedName[0](argName, hdfs://localhost/user/my.vcf, false) 0s passed
testHasUserSuppliedName[1](argName:myname, hdfs://localhost/user/my.vcf, true) 0s passed
testHasUserSuppliedName[2](argName:myname,key1=value1, hdfs://localhost/user/my.vcf, true) 0s passed
testHasUserSuppliedName[3](argName:myname//, hdfs://localhost/user/my.vcf, true) 0s passed
testHasUserSuppliedName[4](argName:myname//, /user/my.vcf, true) 0.001s passed
testHasUserSuppliedName[5](argName, /user/my.vcf, false) 0s passed
testHdfsPathAndName[0](argName, hdfs://localhost/user/my.vcf, hdfs://localhost/user/my.vcf, hdfs://localhost:8020/user/my.vcf) 0.323s passed
testHdfsPathAndName[1](argName:myname, hdfs://localhost/user/my.vcf, hdfs://localhost/user/my.vcf, myname) 0s passed
testHdfsPathAndName[2](argName:myname,key1=value1, hdfs://localhost/user/my.vcf, hdfs://localhost/user/my.vcf, myname) 0s passed
testHdfsPathAndName[3](argName:myname//, hdfs://localhost/user/my.vcf, hdfs://localhost/user/my.vcf, myname//) 0s passed
testInvalidFeatureTags[0](name:) 0s passed
testInvalidFeatureTags[10](:) 0s passed
testInvalidFeatureTags[11](,:) 0s passed
testInvalidFeatureTags[12](::) 0s passed
testInvalidFeatureTags[13]() 0s passed
testInvalidFeatureTags[14](name,key=value1,key=value2:file) 0.001s passed
testInvalidFeatureTags[15](name,key=value,key=value:file) 0s passed
testInvalidFeatureTags[1](:file) 0s passed
testInvalidFeatureTags[2](,:file) 0.002s passed
testInvalidFeatureTags[3](name,key=value=fred:file) 0s passed
testInvalidFeatureTags[4](name,:file) 0s passed
testInvalidFeatureTags[5](,key=value:file) 0s passed
testInvalidFeatureTags[6](name,key:file) 0.001s passed
testInvalidFeatureTags[7](name,key=:file) 0s passed
testInvalidFeatureTags[8](name,=value:file) 0s passed
testInvalidFeatureTags[9](name,=:file) 0s passed
testNoFeatureNameSpecified[0](myFile) 0s passed
testNoFeatureNameSpecified[1](myName,key1=value,myFile) 0s passed
testNoFeatureNameSpecified[2](=myFile) 0s passed
testNoFeatureNameSpecified[3](,myFile) 0s passed
testNoFeatureNameSpecified[4](=,myFile) 0s passed
testNoFeatureNameSpecified[5](key1=value,myFile) 0s passed
testNullOKAsFeatureName 0s passed
testNullOKAsFileName 0s passed
testRejectNullFile 0.001s passed
testToString 0s passed

Standard error

17:37:39.826 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/minimal_vcf4_file.vcf
17:37:39.827 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/minimal_vcf4_file.vcf
17:37:39.874 INFO  GoogleHadoopFileSystemBase - GHFS version: 1.9.4-hadoop3