17:37:41.098 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.101 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression8979587976509559996.so: /tmp/libgkl_compression8979587976509559996.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.101 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.104 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression14028429265951676060.so: /tmp/libgkl_compression14028429265951676060.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.105 INFO TestEmitUncoveredLociTool - ------------------------------------------------------------
17:37:41.105 INFO TestEmitUncoveredLociTool - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.105 INFO TestEmitUncoveredLociTool - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.105 INFO TestEmitUncoveredLociTool - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.105 INFO TestEmitUncoveredLociTool - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.105 INFO TestEmitUncoveredLociTool - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.105 INFO TestEmitUncoveredLociTool - ------------------------------------------------------------
17:37:41.105 INFO TestEmitUncoveredLociTool - ------------------------------------------------------------
17:37:41.105 INFO TestEmitUncoveredLociTool - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.105 INFO TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.105 INFO TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.105 INFO TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.105 INFO TestEmitUncoveredLociTool - Deflater: JdkDeflater
17:37:41.105 INFO TestEmitUncoveredLociTool - Inflater: JdkInflater
17:37:41.106 INFO TestEmitUncoveredLociTool - GCS max retries/reopens: 20
17:37:41.106 INFO TestEmitUncoveredLociTool - Requester pays: disabled
17:37:41.106 INFO TestEmitUncoveredLociTool - Initializing engine
17:37:41.108 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.108 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.110 INFO IntervalArgumentCollection - Processing 10 bp from intervals
17:37:41.110 INFO TestEmitUncoveredLociTool - Done initializing engine
17:37:41.110 INFO ProgressMeter - Starting traversal
17:37:41.110 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute
17:37:41.111 INFO TestEmitUncoveredLociTool - 0 read(s) filtered by: WellformedReadFilter
0 read(s) filtered by: MappedReadFilter
0 total reads filtered out of 5 reads processed
17:37:41.112 INFO ProgressMeter - unmapped 0.0 10 300000.0
17:37:41.112 INFO ProgressMeter - Traversal complete. Processed 10 total loci in 0.0 minutes.
17:37:41.112 INFO TestEmitUncoveredLociTool - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerUnitTest$TestEmitUncoveredLociTool done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.115 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.118 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression8814151910455368311.so: /tmp/libgkl_compression8814151910455368311.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.118 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.121 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression17530673635560695443.so: /tmp/libgkl_compression17530673635560695443.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.122 INFO TestTransformedLocusWalker - ------------------------------------------------------------
17:37:41.122 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.122 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.122 INFO TestTransformedLocusWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.122 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.122 INFO TestTransformedLocusWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.122 INFO TestTransformedLocusWalker - ------------------------------------------------------------
17:37:41.122 INFO TestTransformedLocusWalker - ------------------------------------------------------------
17:37:41.123 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.123 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.123 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.123 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.123 INFO TestTransformedLocusWalker - Deflater: JdkDeflater
17:37:41.123 INFO TestTransformedLocusWalker - Inflater: JdkInflater
17:37:41.123 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20
17:37:41.123 INFO TestTransformedLocusWalker - Requester pays: disabled
17:37:41.123 INFO TestTransformedLocusWalker - Initializing engine
17:37:41.124 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.124 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.125 INFO IntervalArgumentCollection - Processing 1 bp from intervals
17:37:41.125 INFO TestTransformedLocusWalker - Done initializing engine
17:37:41.125 INFO ProgressMeter - Starting traversal
17:37:41.125 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute
17:37:41.127 INFO TestTransformedLocusWalker - 0 read(s) filtered by:
17:37:41.127 INFO ProgressMeter - unmapped 0.0 1 30000.0
17:37:41.127 INFO ProgressMeter - Traversal complete. Processed 1 total loci in 0.0 minutes.
17:37:41.127 INFO TestTransformedLocusWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000