Class org.broadinstitute.hellbender.engine.MultiVariantWalkerGroupedOnStartUnitTest

5

tests

0

failures

0

ignored

0.123s

duration

100%

successful

Tests

Test Duration Result
testIgnoreVariantsThatStartOutsideInterval 0.023s passed
testMergingTwoFilesCorrectBehavior 0.035s passed
testSimpleCaseDuplicateFile[0](src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample1.vcf, src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample1.copy.vcf) 0.026s passed
testSimpleCaseDuplicateFile[1](src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample2.vcf, src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample2.copy.vcf) 0.024s passed
testSingleFileMultisites 0.015s passed

Standard error

17:37:41.225 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.228 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression977058855840454790.so: /tmp/libgkl_compression977058855840454790.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.229 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.231 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression2618428180836055036.so: /tmp/libgkl_compression2618428180836055036.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.232 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - Deflater: JdkDeflater
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - Inflater: JdkInflater
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - GCS max retries/reopens: 20
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - Requester pays: disabled
17:37:41.233 INFO  DummyExampleGroupingMultiVariantWalker - Initializing engine
17:37:41.235 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample1.vcf
17:37:41.237 INFO  IntervalArgumentCollection - Processing 41 bp from intervals
17:37:41.237 INFO  DummyExampleGroupingMultiVariantWalker - Done initializing engine
17:37:41.237 INFO  ProgressMeter - Starting traversal
17:37:41.237 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
17:37:41.243 INFO  ProgressMeter -             unmapped              0.0                     4          40000.0
17:37:41.243 INFO  ProgressMeter - Traversal complete. Processed 4 total variants in 0.0 minutes.
17:37:41.243 INFO  DummyExampleGroupingMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerGroupedOnStartUnitTest$DummyExampleGroupingMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.248 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.251 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression1472834601488189709.so: /tmp/libgkl_compression1472834601488189709.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.251 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.254 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression13762252309748603544.so: /tmp/libgkl_compression13762252309748603544.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.255 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.255 INFO  DummyExampleGroupingMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - Deflater: JdkDeflater
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - Inflater: JdkInflater
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - GCS max retries/reopens: 20
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - Requester pays: disabled
17:37:41.256 INFO  DummyExampleGroupingMultiVariantWalker - Initializing engine
17:37:41.258 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample1.vcf
17:37:41.259 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample2.vcf
17:37:41.269 INFO  DummyExampleGroupingMultiVariantWalker - Done initializing engine
17:37:41.270 INFO  ProgressMeter - Starting traversal
17:37:41.270 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
17:37:41.271 INFO  ProgressMeter -             unmapped              0.0                    21        1260000.0
17:37:41.271 INFO  ProgressMeter - Traversal complete. Processed 21 total variants in 0.0 minutes.
17:37:41.271 INFO  DummyExampleGroupingMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerGroupedOnStartUnitTest$DummyExampleGroupingMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.272 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample1.vcf
17:37:41.273 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample2.vcf
17:37:41.283 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.286 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression470423568593642716.so: /tmp/libgkl_compression470423568593642716.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.286 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.289 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression11416924800948847573.so: /tmp/libgkl_compression11416924800948847573.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - Deflater: JdkDeflater
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - Inflater: JdkInflater
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - GCS max retries/reopens: 20
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - Requester pays: disabled
17:37:41.290 INFO  DummyExampleGroupingMultiVariantWalker - Initializing engine
17:37:41.291 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample1.vcf
17:37:41.293 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample1.copy.vcf
17:37:41.301 INFO  DummyExampleGroupingMultiVariantWalker - Done initializing engine
17:37:41.301 INFO  ProgressMeter - Starting traversal
17:37:41.301 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
17:37:41.303 INFO  ProgressMeter -             unmapped              0.0                    22        1320000.0
17:37:41.303 INFO  ProgressMeter - Traversal complete. Processed 22 total variants in 0.0 minutes.
17:37:41.303 INFO  DummyExampleGroupingMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerGroupedOnStartUnitTest$DummyExampleGroupingMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.304 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample1.vcf
17:37:41.308 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.311 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression10968650145633732015.so: /tmp/libgkl_compression10968650145633732015.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.311 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.314 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression1846443930351316315.so: /tmp/libgkl_compression1846443930351316315.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - Deflater: JdkDeflater
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - Inflater: JdkInflater
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - GCS max retries/reopens: 20
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - Requester pays: disabled
17:37:41.315 INFO  DummyExampleGroupingMultiVariantWalker - Initializing engine
17:37:41.317 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample2.vcf
17:37:41.318 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample2.copy.vcf
17:37:41.326 INFO  DummyExampleGroupingMultiVariantWalker - Done initializing engine
17:37:41.326 INFO  ProgressMeter - Starting traversal
17:37:41.326 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
17:37:41.327 INFO  ProgressMeter -             unmapped              0.0                    20        1200000.0
17:37:41.327 INFO  ProgressMeter - Traversal complete. Processed 20 total variants in 0.0 minutes.
17:37:41.327 INFO  DummyExampleGroupingMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerGroupedOnStartUnitTest$DummyExampleGroupingMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.328 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample2.vcf
17:37:41.333 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.336 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression538425680898289883.so: /tmp/libgkl_compression538425680898289883.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.336 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.339 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression11893900780213747416.so: /tmp/libgkl_compression11893900780213747416.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - ------------------------------------------------------------
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - Deflater: JdkDeflater
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - Inflater: JdkInflater
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - GCS max retries/reopens: 20
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - Requester pays: disabled
17:37:41.340 INFO  DummyExampleGroupingMultiVariantWalker - Initializing engine
17:37:41.341 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantWalkerGroupedOnStart/gvcfExample3.vcf
17:37:41.343 INFO  DummyExampleGroupingMultiVariantWalker - Done initializing engine
17:37:41.343 INFO  ProgressMeter - Starting traversal
17:37:41.343 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
17:37:41.343 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
17:37:41.343 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
17:37:41.343 INFO  DummyExampleGroupingMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerGroupedOnStartUnitTest$DummyExampleGroupingMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000