17:37:41.349 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.352 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression10135312928959832110.so: /tmp/libgkl_compression10135312928959832110.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.352 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.355 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression566687091594938515.so: /tmp/libgkl_compression566687091594938515.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.356 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.356 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.356 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.356 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.356 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.356 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.356 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.356 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.356 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.356 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.356 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.356 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.356 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.356 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.356 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.356 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.356 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.358 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.358 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.361 INFO IntervalArgumentCollection - Processing 31 bp from intervals
17:37:41.361 INFO dummyMultiplePassReadWalker - Done initializing engine
17:37:41.361 INFO ProgressMeter - Starting traversal
17:37:41.361 INFO ProgressMeter - Current Locus Elapsed Minutes Reads Processed Reads/Minute
17:37:41.363 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.364 INFO dummyMultiplePassReadWalker - Starting traversal pass 2
17:37:41.364 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.364 INFO ProgressMeter - unmapped 0.0 10 200000.0
17:37:41.364 INFO ProgressMeter - Traversal complete. Processed 10 total reads in 0.0 minutes.
17:37:41.364 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.367 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.370 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression1937549432071801984.so: /tmp/libgkl_compression1937549432071801984.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.370 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.373 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression6089425982060508436.so: /tmp/libgkl_compression6089425982060508436.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.374 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.374 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.374 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.374 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.374 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.374 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.374 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.374 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.374 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.374 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.374 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.374 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.374 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.374 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.374 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.374 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.374 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.378 INFO IntervalArgumentCollection - Processing 31 bp from intervals
17:37:41.378 INFO dummyMultiplePassReadWalker - Done initializing engine
17:37:41.378 INFO ProgressMeter - Starting traversal
17:37:41.378 INFO ProgressMeter - Current Locus Elapsed Minutes Reads Processed Reads/Minute
17:37:41.383 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.383 INFO dummyMultiplePassReadWalker - Starting traversal pass 2
17:37:41.389 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.389 INFO ProgressMeter - unmapped 0.0 10 54545.5
17:37:41.389 INFO ProgressMeter - Traversal complete. Processed 10 total reads in 0.0 minutes.
17:37:41.389 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.393 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.395 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression7046778713628878352.so: /tmp/libgkl_compression7046778713628878352.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.396 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.398 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression16071214187026060761.so: /tmp/libgkl_compression16071214187026060761.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.399 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.399 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.399 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.399 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.399 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.399 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.399 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.399 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.399 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.399 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.399 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.399 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.399 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.399 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.399 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.399 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.399 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.400 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.400 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.400 INFO dummyMultiplePassReadWalker - Done initializing engine
17:37:41.400 INFO ProgressMeter - Starting traversal
17:37:41.400 INFO ProgressMeter - Current Locus Elapsed Minutes Reads Processed Reads/Minute
17:37:41.400 INFO ProgressMeter - unmapped 0.0 0 NaN
17:37:41.400 INFO ProgressMeter - Traversal complete. Processed 0 total reads in 0.0 minutes.
17:37:41.400 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.404 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.406 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression65948223779344445.so: /tmp/libgkl_compression65948223779344445.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.406 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.409 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression7744944352730746966.so: /tmp/libgkl_compression7744944352730746966.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.410 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.410 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.410 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.410 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.410 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.410 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.410 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.410 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.410 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.410 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.410 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.410 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.410 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.410 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.410 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.410 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.410 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.410 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.410 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.411 INFO dummyMultiplePassReadWalker - Done initializing engine
17:37:41.411 INFO ProgressMeter - Starting traversal
17:37:41.411 INFO ProgressMeter - Current Locus Elapsed Minutes Reads Processed Reads/Minute
17:37:41.411 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.411 INFO ProgressMeter - unmapped 0.0 8 Infinity
17:37:41.411 INFO ProgressMeter - Traversal complete. Processed 8 total reads in 0.0 minutes.
17:37:41.411 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.414 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.417 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression5373124162786933650.so: /tmp/libgkl_compression5373124162786933650.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.417 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.420 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression16829240554779160648.so: /tmp/libgkl_compression16829240554779160648.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.421 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.421 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.421 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.421 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.421 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.421 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.421 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.421 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.421 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.421 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.421 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.421 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.421 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.421 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.421 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.421 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.421 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.421 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.421 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.421 INFO dummyMultiplePassReadWalker - Done initializing engine
17:37:41.421 INFO ProgressMeter - Starting traversal
17:37:41.421 INFO ProgressMeter - Current Locus Elapsed Minutes Reads Processed Reads/Minute
17:37:41.422 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.422 INFO dummyMultiplePassReadWalker - Starting traversal pass 2
17:37:41.422 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.422 INFO ProgressMeter - unmapped 0.0 16 960000.0
17:37:41.422 INFO ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
17:37:41.422 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.425 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.428 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression3401722091393506160.so: /tmp/libgkl_compression3401722091393506160.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.428 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.431 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression14416084686492642215.so: /tmp/libgkl_compression14416084686492642215.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.432 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.432 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.432 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.432 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.432 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.432 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.432 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.432 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.432 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.432 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.432 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.432 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.432 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.432 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.432 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.432 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.432 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.432 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.432 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.432 INFO dummyMultiplePassReadWalker - Done initializing engine
17:37:41.432 INFO ProgressMeter - Starting traversal
17:37:41.432 INFO ProgressMeter - Current Locus Elapsed Minutes Reads Processed Reads/Minute
17:37:41.433 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.433 INFO dummyMultiplePassReadWalker - Starting traversal pass 2
17:37:41.433 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.433 INFO dummyMultiplePassReadWalker - Starting traversal pass 3
17:37:41.433 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.433 INFO dummyMultiplePassReadWalker - Starting traversal pass 4
17:37:41.433 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.433 INFO dummyMultiplePassReadWalker - Starting traversal pass 5
17:37:41.434 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.434 INFO ProgressMeter - unmapped 0.0 40 1200000.0
17:37:41.434 INFO ProgressMeter - Traversal complete. Processed 40 total reads in 0.0 minutes.
17:37:41.434 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.437 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.439 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression15542223561025309392.so: /tmp/libgkl_compression15542223561025309392.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.440 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.442 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression2401278052666879842.so: /tmp/libgkl_compression2401278052666879842.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.443 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.443 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.443 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.443 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.443 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.443 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.443 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.443 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.443 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.443 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.443 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.443 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.443 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.443 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.443 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.443 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.443 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.444 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.444 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.444 INFO dummyMultiplePassReadWalker - Done initializing engine
17:37:41.444 INFO ProgressMeter - Starting traversal
17:37:41.444 INFO ProgressMeter - Current Locus Elapsed Minutes Reads Processed Reads/Minute
17:37:41.444 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.444 INFO dummyMultiplePassReadWalker - Starting traversal pass 2
17:37:41.444 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.444 INFO dummyMultiplePassReadWalker - Starting traversal pass 3
17:37:41.444 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.444 INFO dummyMultiplePassReadWalker - Starting traversal pass 4
17:37:41.445 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.445 INFO dummyMultiplePassReadWalker - Starting traversal pass 5
17:37:41.445 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.445 INFO dummyMultiplePassReadWalker - Starting traversal pass 6
17:37:41.445 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.445 INFO dummyMultiplePassReadWalker - Starting traversal pass 7
17:37:41.445 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.445 INFO dummyMultiplePassReadWalker - Starting traversal pass 8
17:37:41.445 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.445 INFO dummyMultiplePassReadWalker - Starting traversal pass 9
17:37:41.445 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.446 INFO dummyMultiplePassReadWalker - Starting traversal pass 10
17:37:41.446 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.446 INFO dummyMultiplePassReadWalker - Starting traversal pass 11
17:37:41.446 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.446 INFO dummyMultiplePassReadWalker - Starting traversal pass 12
17:37:41.447 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.448 INFO dummyMultiplePassReadWalker - Starting traversal pass 13
17:37:41.448 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.448 INFO dummyMultiplePassReadWalker - Starting traversal pass 14
17:37:41.448 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.449 INFO dummyMultiplePassReadWalker - Starting traversal pass 15
17:37:41.449 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.449 INFO dummyMultiplePassReadWalker - Starting traversal pass 16
17:37:41.449 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.450 INFO dummyMultiplePassReadWalker - Starting traversal pass 17
17:37:41.450 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.450 INFO dummyMultiplePassReadWalker - Starting traversal pass 18
17:37:41.450 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.451 INFO dummyMultiplePassReadWalker - Starting traversal pass 19
17:37:41.451 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.451 INFO dummyMultiplePassReadWalker - Starting traversal pass 20
17:37:41.451 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.451 INFO dummyMultiplePassReadWalker - Starting traversal pass 21
17:37:41.451 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.451 INFO dummyMultiplePassReadWalker - Starting traversal pass 22
17:37:41.451 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.451 INFO dummyMultiplePassReadWalker - Starting traversal pass 23
17:37:41.452 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.452 INFO dummyMultiplePassReadWalker - Starting traversal pass 24
17:37:41.452 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.452 INFO dummyMultiplePassReadWalker - Starting traversal pass 25
17:37:41.453 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.453 INFO ProgressMeter - unmapped 0.0 200 1333333.3
17:37:41.453 INFO ProgressMeter - Traversal complete. Processed 200 total reads in 0.0 minutes.
17:37:41.453 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.457 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.460 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression17196292741927467798.so: /tmp/libgkl_compression17196292741927467798.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.460 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.464 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression369371221448880915.so: /tmp/libgkl_compression369371221448880915.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.465 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.465 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.465 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.465 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.465 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.465 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.465 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.465 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.465 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.465 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.465 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.465 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.465 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.465 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.465 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.465 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.465 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.466 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.466 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.468 INFO IntervalArgumentCollection - Processing 31 bp from intervals
17:37:41.469 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.472 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.475 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression10210925608056923548.so: /tmp/libgkl_compression10210925608056923548.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.475 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.478 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression17119701975151688227.so: /tmp/libgkl_compression17119701975151688227.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.479 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.479 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.479 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.479 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.479 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.479 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.479 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.479 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.479 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.479 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.479 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.479 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.479 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.479 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.479 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.479 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.479 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.482 INFO IntervalArgumentCollection - Processing 31 bp from intervals
17:37:41.483 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.486 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.489 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression11291539035017905958.so: /tmp/libgkl_compression11291539035017905958.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.489 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.492 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression7319747310978458341.so: /tmp/libgkl_compression7319747310978458341.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.493 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.493 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.493 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.493 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.493 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.493 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.493 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.493 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.493 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.493 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.493 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.493 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.493 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.493 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.493 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.493 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.493 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.496 INFO IntervalArgumentCollection - Processing 31 bp from intervals
17:37:41.496 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.500 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.502 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression10698450078378942699.so: /tmp/libgkl_compression10698450078378942699.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.502 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.505 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression4737344770742962929.so: /tmp/libgkl_compression4737344770742962929.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.506 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.506 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.506 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.506 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.506 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.506 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.506 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.506 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.506 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.506 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.506 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.506 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.506 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.506 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.506 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.506 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.506 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.507 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.507 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.507 INFO dummyMultiplePassReadWalker - Done initializing engine
17:37:41.507 INFO ProgressMeter - Starting traversal
17:37:41.508 INFO ProgressMeter - Current Locus Elapsed Minutes Reads Processed Reads/Minute
17:37:41.508 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.508 INFO dummyMultiplePassReadWalker - Starting traversal pass 2
17:37:41.508 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.508 INFO ProgressMeter - unmapped 0.0 16 Infinity
17:37:41.508 INFO ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
17:37:41.508 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.511 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.514 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression1559702901310411677.so: /tmp/libgkl_compression1559702901310411677.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.514 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.517 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression13748753945690623107.so: /tmp/libgkl_compression13748753945690623107.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.517 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.517 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.517 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.517 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.517 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.517 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.517 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.517 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.518 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.518 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.518 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.518 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.518 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.518 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.518 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.518 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.518 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.519 INFO dummyMultiplePassReadWalker - Done initializing engine
17:37:41.519 INFO ProgressMeter - Starting traversal
17:37:41.519 INFO ProgressMeter - Current Locus Elapsed Minutes Reads Processed Reads/Minute
17:37:41.521 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.522 INFO dummyMultiplePassReadWalker - Starting traversal pass 2
17:37:41.522 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.522 INFO ProgressMeter - unmapped 0.0 16 320000.0
17:37:41.522 INFO ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
17:37:41.522 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
17:37:41.525 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.528 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression5020643224026860703.so: /tmp/libgkl_compression5020643224026860703.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.528 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.531 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression9622651436470889146.so: /tmp/libgkl_compression9622651436470889146.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.532 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.532 INFO dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.532 INFO dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.532 INFO dummyMultiplePassReadWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.532 INFO dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.532 INFO dummyMultiplePassReadWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.532 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.532 INFO dummyMultiplePassReadWalker - ------------------------------------------------------------
17:37:41.532 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.532 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.532 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.532 INFO dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.532 INFO dummyMultiplePassReadWalker - Deflater: JdkDeflater
17:37:41.532 INFO dummyMultiplePassReadWalker - Inflater: JdkInflater
17:37:41.532 INFO dummyMultiplePassReadWalker - GCS max retries/reopens: 20
17:37:41.532 INFO dummyMultiplePassReadWalker - Requester pays: disabled
17:37:41.532 INFO dummyMultiplePassReadWalker - Initializing engine
17:37:41.533 INFO dummyMultiplePassReadWalker - Done initializing engine
17:37:41.533 INFO ProgressMeter - Starting traversal
17:37:41.533 INFO ProgressMeter - Current Locus Elapsed Minutes Reads Processed Reads/Minute
17:37:41.536 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.536 INFO dummyMultiplePassReadWalker - Starting traversal pass 2
17:37:41.538 INFO dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter
17:37:41.538 INFO ProgressMeter - unmapped 0.0 16 192000.0
17:37:41.538 INFO ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
17:37:41.538 INFO dummyMultiplePassReadWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000