Class org.broadinstitute.hellbender.engine.MultiplePassVariantWalkerUnitTest

17:37:41.542 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.545 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression10739292079944204653.so: /tmp/libgkl_compression10739292079944204653.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.545 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:41.548 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression17313217066952956197.so: /tmp/libgkl_compression17313217066952956197.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:41.548 INFO  DummyMultiplePassVariantWalker - ------------------------------------------------------------
17:37:41.549 INFO  DummyMultiplePassVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:37:41.549 INFO  DummyMultiplePassVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:41.549 INFO  DummyMultiplePassVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:41.549 INFO  DummyMultiplePassVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:41.549 INFO  DummyMultiplePassVariantWalker - Start Date/Time: October 27, 2025 at 5:37:41 PM UTC
17:37:41.549 INFO  DummyMultiplePassVariantWalker - ------------------------------------------------------------
17:37:41.549 INFO  DummyMultiplePassVariantWalker - ------------------------------------------------------------
17:37:41.549 INFO  DummyMultiplePassVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:41.549 INFO  DummyMultiplePassVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:41.549 INFO  DummyMultiplePassVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:41.549 INFO  DummyMultiplePassVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:41.549 INFO  DummyMultiplePassVariantWalker - Deflater: JdkDeflater
17:37:41.549 INFO  DummyMultiplePassVariantWalker - Inflater: JdkInflater
17:37:41.549 INFO  DummyMultiplePassVariantWalker - GCS max retries/reopens: 20
17:37:41.549 INFO  DummyMultiplePassVariantWalker - Requester pays: disabled
17:37:41.549 INFO  DummyMultiplePassVariantWalker - Initializing engine
17:37:41.550 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/VariantsToTable/multiallelic.vcf
17:37:41.551 WARN  IndexUtils - Feature file "file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/VariantsToTable/multiallelic.vcf" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
17:37:41.552 WARN  IndexUtils - Feature file "file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/VariantsToTable/multiallelic.vcf" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
17:37:41.552 WARN  IndexUtils - Feature file "file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/VariantsToTable/multiallelic.vcf" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
17:37:41.552 INFO  DummyMultiplePassVariantWalker - Done initializing engine
17:37:41.552 INFO  ProgressMeter - Starting traversal
17:37:41.552 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
17:37:41.552 INFO  DummyMultiplePassVariantWalker - Starting pass 0 through the variants
17:37:41.554 INFO  DummyMultiplePassVariantWalker - Finished pass 0 through the variants
17:37:41.554 INFO  DummyMultiplePassVariantWalker - Starting pass 1 through the variants
17:37:41.555 INFO  DummyMultiplePassVariantWalker - Finished pass 1 through the variants
17:37:41.555 INFO  DummyMultiplePassVariantWalker - No variants filtered by: AllowAllVariantsVariantFilter
17:37:41.555 INFO  DummyMultiplePassVariantWalker - 0 read(s) filtered by: AllowAllReadsReadFilter 

17:37:41.555 INFO  ProgressMeter -             unmapped              0.0                   104        2080000.0
17:37:41.555 INFO  ProgressMeter - Traversal complete. Processed 104 total variants in 0.0 minutes.
17:37:41.555 INFO  DummyMultiplePassVariantWalker - Shutting down engine
[October 27, 2025 at 5:37:41 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassVariantWalkerUnitTest$DummyMultiplePassVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000