Class org.broadinstitute.hellbender.engine.ReferenceDataSourceUnitTest

all > org.broadinstitute.hellbender.engine > ReferenceDataSourceUnitTest
35

tests
0

failures
0

ignored
0.084s

duration
100%

successful

Tests

Test Duration Result
testGetSequenceDictionary 0s passed
testLoadAndQueryB37Reference 0.020s passed
testLoadAndQueryHG38Reference 0.047s passed
testNonExistentReference 0.001s passed
testNullReference 0s passed
testQueryAndIterate[0](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 1:1-3, NNN) 0.001s passed
testQueryAndIterate[10](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 2:9995-10005, NNNNNNCGTAT) 0.001s passed
testQueryAndIterate[11](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 2:10001-10080, CGTATCCCACACACCACACCCACACACCACACCCACACACACCCACACCCACACCCACACACACCACACCCACACACCAC) 0.001s passed
testQueryAndIterate[12](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 2:10005-10084, TCCCACACACCACACCCACACACCACACCCACACACACCCACACCCACACCCACACACACCACACCCACACACCACACCC) 0s passed
testQueryAndIterate[13](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 2:15995-16000, TGTCAG) 0.001s passed
testQueryAndIterate[1](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 1:11041-11045, GCAAA) 0.001s passed
testQueryAndIterate[2](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 1:11210-11220, CGGTGCTGTGC) 0s passed
testQueryAndIterate[3](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 2:9995-10005, NNNNNNCGTAT) 0.001s passed
testQueryAndIterate[4](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 2:10001-10080, CGTATCCCACACACCACACCCACACACCACACCCACACACACCCACACCCACACCCACACACACCACACCCACACACCAC) 0s passed
testQueryAndIterate[5](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 2:10005-10084, TCCCACACACCACACCCACACACCACACCCACACACACCCACACCCACACCCACACACACCACACCCACACACCACACCC) 0.001s passed
testQueryAndIterate[6](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 2:15995-16000, TGTCAG) 0s passed
testQueryAndIterate[7](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 1:1-3, NNN) 0.002s passed
testQueryAndIterate[8](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 1:11041-11045, GCAAA) 0s passed
testQueryAndIterate[9](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 1:11210-11220, CGGTGCTGTGC) 0s passed
testQueryAndPrefetch[0](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 1:1-3, NNN) 0.001s passed
testQueryAndPrefetch[10](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 2:9995-10005, NNNNNNCGTAT) 0s passed
testQueryAndPrefetch[11](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 2:10001-10080, CGTATCCCACACACCACACCCACACACCACACCCACACACACCCACACCCACACCCACACACACCACACCCACACACCAC) 0.001s passed
testQueryAndPrefetch[12](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 2:10005-10084, TCCCACACACCACACCCACACACCACACCCACACACACCCACACCCACACCCACACACACCACACCCACACACCACACCC) 0s passed
testQueryAndPrefetch[13](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 2:15995-16000, TGTCAG) 0s passed
testQueryAndPrefetch[1](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 1:11041-11045, GCAAA) 0s passed
testQueryAndPrefetch[2](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 1:11210-11220, CGGTGCTGTGC) 0.001s passed
testQueryAndPrefetch[3](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 2:9995-10005, NNNNNNCGTAT) 0s passed
testQueryAndPrefetch[4](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 2:10001-10080, CGTATCCCACACACCACACCCACACACCACACCCACACACACCCACACCCACACCCACACACACCACACCCACACACCAC) 0.001s passed
testQueryAndPrefetch[5](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 2:10005-10084, TCCCACACACCACACCCACACACCACACCCACACACACCCACACCCACACCCACACACACCACACCCACACACCACACCC) 0s passed
testQueryAndPrefetch[6](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta, 2:15995-16000, TGTCAG) 0s passed
testQueryAndPrefetch[7](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 1:1-3, NNN) 0s passed
testQueryAndPrefetch[8](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 1:11041-11045, GCAAA) 0.001s passed
testQueryAndPrefetch[9](/home/runner/work/gatk/gatk/src/test/resources/hg19mini.fasta.gz, 1:11210-11220, CGGTGCTGTGC) 0.001s passed
testReferenceWithMissingDictFile 0.001s passed
testReferenceWithMissingFaiFile 0s passed

Standard error

17:37:41.730 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.779 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.791 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.791 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.792 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.793 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.793 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.794 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.795 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.799 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.800 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.800 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.801 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.802 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.802 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:37:41.803 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater