Standard error
17:37:42.578 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:42.581 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression8136465847204095644.so: /tmp/libgkl_compression8136465847204095644.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:42.581 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:37:42.584 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression13706826930420728084.so: /tmp/libgkl_compression13706826930420728084.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:37:42.585 INFO TestGATKSparkToolWithVariants - ------------------------------------------------------------
17:37:42.585 INFO TestGATKSparkToolWithVariants - org.broadinstitute.hellbender.engine.spark vUnavailable
17:37:42.585 INFO TestGATKSparkToolWithVariants - For support and documentation go to https://software.broadinstitute.org/gatk/
17:37:42.585 INFO TestGATKSparkToolWithVariants - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:37:42.585 INFO TestGATKSparkToolWithVariants - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:37:42.585 INFO TestGATKSparkToolWithVariants - Start Date/Time: October 27, 2025 at 5:37:42 PM UTC
17:37:42.585 INFO TestGATKSparkToolWithVariants - ------------------------------------------------------------
17:37:42.585 INFO TestGATKSparkToolWithVariants - ------------------------------------------------------------
17:37:42.586 INFO TestGATKSparkToolWithVariants - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:37:42.586 INFO TestGATKSparkToolWithVariants - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:37:42.586 INFO TestGATKSparkToolWithVariants - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:37:42.586 INFO TestGATKSparkToolWithVariants - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:37:42.586 INFO TestGATKSparkToolWithVariants - Deflater: JdkDeflater
17:37:42.586 INFO TestGATKSparkToolWithVariants - Inflater: JdkInflater
17:37:42.586 INFO TestGATKSparkToolWithVariants - GCS max retries/reopens: 20
17:37:42.586 INFO TestGATKSparkToolWithVariants - Requester pays: disabled
17:37:42.586 INFO TestGATKSparkToolWithVariants - Initializing engine
17:37:42.586 INFO TestGATKSparkToolWithVariants - Done initializing engine
17:37:42.586 INFO TestGATKSparkToolWithVariants - Spark verbosity set to INFO (see --spark-verbosity argument)
17:37:42.587 INFO TestGATKSparkToolWithVariants - Shutting down engine
[October 27, 2025 at 5:37:42 PM UTC] org.broadinstitute.hellbender.engine.spark.GATKSparkToolUnitTest$TestGATKSparkToolWithVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000