Class org.broadinstitute.hellbender.tools.walkers.annotator.ExcessHetUnitTest

all > org.broadinstitute.hellbender.tools.walkers.annotator > ExcessHetUnitTest
37

tests
0

failures
0

ignored
2.531s

duration
100%

successful

Tests

Test Duration Result
smallSets[0](1, 0, 0, 1.0) 0s passed
smallSets[10](537, 845, 72, 0.14763417247333427) 0s passed
smallSets[11](847, 431, 448, 0.7957628300988617) 0s passed
smallSets[12](659, 147, 910, 0.9664916975760656) 0s passed
smallSets[13](633, 938, 84, 0.04808183902489469) 0s passed
smallSets[14](881, 690, 292, 0.6731260236412528) 0s passed
smallSets[15](554, 371, 184, 0.1930042049715512) 0.001s passed
smallSets[16](552, 438, 207, 0.9367121245319978) 0s passed
smallSets[17](886, 812, 216, 0.1488013326311986) 0s passed
smallSets[18](537, 845, 72, 0.14763417247333427) 0s passed
smallSets[19](8700, 3186, 5918, 0.46111947799744585) 0s passed
smallSets[1](1, 1, 0, 1.0) 0s passed
smallSets[20](1998, 1, 998001, 0.7359430663641368) 0s passed
smallSets[21](19800, 100, 980100, 0.5267641864418983) 0s passed
smallSets[22](180000, 10000, 810000, 0.5028886002589862) 0.001s passed
smallSets[23](500000, 250000, 250000, 0.5009973527964665) 0.003s passed
smallSets[2](5, 87, 8, 0.9999999998661845) 0.005s passed
smallSets[3](17, 81, 2, 0.9304235455950692) 0s passed
smallSets[4](21, 79, 0, 0.3096036754839548) 0s passed
smallSets[5](707, 359, 9, 0.0) 0s passed
smallSets[6](804, 599, 70, 0.0) 0s passed
smallSets[7](684, 559, 629, 1.0) 0s passed
smallSets[8](192, 835, 763, 1.0) 0s passed
smallSets[9](723, 277, 754, 0.9999982776347127) 0.001s passed
testAllHetsForLargeCohorts 0.864s passed
testEmptyIfNoGenotypes 0s passed
testExcessHetForMultiallelicVCCompoundHets 0.002s passed
testExcessHetForMultiallelicVCCompoundHetsRefAltFlip 0s passed
testExcessHetForMultiallelicVCDifferentAlts 0s passed
testFounderIDsAndPedigreeFile 0.003s passed
testIllegalArgs[0](-1, 1, 1) 0s passed
testIllegalArgs[1](1, -1, 1) 0s passed
testIllegalArgs[2](1, 1, -1) 0s passed
testLabels 0s passed
testLargeCohorts 1.641s passed
testPositiveZeroPhredScore 0.001s passed
testSingletonVsCommonAllele 0.009s passed

Standard error

17:46:09.986 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
17:46:09.986 DEBUG GenomeLocParser -  1 (16000 bp)
17:46:09.986 DEBUG GenomeLocParser -  2 (16000 bp)
17:46:09.986 DEBUG GenomeLocParser -  3 (16000 bp)
17:46:09.986 DEBUG GenomeLocParser -  4 (16000 bp)
17:46:10.869 INFO  PedReader - Phenotype is other? false