Class org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeffUnitTest

all > org.broadinstitute.hellbender.tools.walkers.annotator > InbreedingCoeffUnitTest
15

tests
0

failures
0

ignored
2.654s

duration
100%

successful

Tests

Test Duration Result
compareOldWithReblocked 0.001s passed
testAllHetsForLargeCohorts 0.913s passed
testEmptyIfNoGenotypes 0.001s passed
testInbreedingCoeffForMultiallelicVC 0.001s passed
testInbreedingCoeffForMultiallelicVC_AS 0.004s passed
testInbreedingCoeffForMultiallelicVC_refAltFlip 0s passed
testInbreedingCoeffForMultiallelicVC_usingFounders 0s passed
testInbreedingCoeffForMultiallelicVC_usingPedigreeFile 0.001s passed
testLabels 0.001s passed
testLabels_AS 0s passed
testLargeCohorts 1.687s passed
testRoundingIsntAppliedToEachGenotype 0.001s passed
testSingletonVsCommonAllele 0.036s passed
testSingletonVsCommonAllele_refAltFlip 0.008s passed
testTinyCohorts_AS 0s passed

Standard error

17:46:12.559 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
17:46:12.559 DEBUG GenomeLocParser -  1 (16000 bp)
17:46:12.559 DEBUG GenomeLocParser -  2 (16000 bp)
17:46:12.559 DEBUG GenomeLocParser -  3 (16000 bp)
17:46:12.559 DEBUG GenomeLocParser -  4 (16000 bp)
17:46:13.475 WARN  InbreedingCoeff - InbreedingCoeff will not be calculated at position null:0 and possibly subsequent; at least 10 samples must have called genotypes
17:46:13.482 INFO  PedReader - Phenotype is other? false
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (26, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (0, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (27, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (43, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (40, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (24, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (36, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (12, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (41, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (39, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (16, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (38, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (46, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (22, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (44, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (23, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (37, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (32, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (5, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (45, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (28, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (35, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (11, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (13, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (1, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (21, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (15, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (33, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (17, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (6, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (4, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (2, 0) from stageTCMP
17:46:13.723 DEBUG ExecutorMetricsPoller - removing (10, 0) from stageTCMP