Class org.broadinstitute.hellbender.utils.fasta.CachingIndexedFastaSequenceFileUnitTest

40

tests

0

failures

0

ignored

13.975s

duration

100%

successful

Tests

Test Duration Result
testCachingIndexedFastaReaderSequential1[0](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 1) 0.116s passed
testCachingIndexedFastaReaderSequential1[10](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 10) 0.059s passed
testCachingIndexedFastaReaderSequential1[11](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 100) 0.068s passed
testCachingIndexedFastaReaderSequential1[12](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 1) 0.141s passed
testCachingIndexedFastaReaderSequential1[13](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 10) 0.147s passed
testCachingIndexedFastaReaderSequential1[14](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 100) 7.617s passed
testCachingIndexedFastaReaderSequential1[15](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.066s passed
testCachingIndexedFastaReaderSequential1[16](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.067s passed
testCachingIndexedFastaReaderSequential1[17](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.076s passed
testCachingIndexedFastaReaderSequential1[1](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 10) 0.066s passed
testCachingIndexedFastaReaderSequential1[2](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 100) 0.072s passed
testCachingIndexedFastaReaderSequential1[3](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 1) 0.065s passed
testCachingIndexedFastaReaderSequential1[4](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 10) 0.063s passed
testCachingIndexedFastaReaderSequential1[5](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 100) 0.139s passed
testCachingIndexedFastaReaderSequential1[6](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.062s passed
testCachingIndexedFastaReaderSequential1[7](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.063s passed
testCachingIndexedFastaReaderSequential1[8](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.072s passed
testCachingIndexedFastaReaderSequential1[9](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 1) 0.089s passed
testCachingIndexedFastaReaderTwoStage[0](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 1) 0.010s passed
testCachingIndexedFastaReaderTwoStage[10](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 10) 0.008s passed
testCachingIndexedFastaReaderTwoStage[11](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 100) 0.009s passed
testCachingIndexedFastaReaderTwoStage[12](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 1) 0.760s passed
testCachingIndexedFastaReaderTwoStage[13](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 10) 0.762s passed
testCachingIndexedFastaReaderTwoStage[14](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 100) 0.755s passed
testCachingIndexedFastaReaderTwoStage[15](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.803s passed
testCachingIndexedFastaReaderTwoStage[16](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.801s passed
testCachingIndexedFastaReaderTwoStage[17](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.799s passed
testCachingIndexedFastaReaderTwoStage[1](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 10) 0.009s passed
testCachingIndexedFastaReaderTwoStage[2](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 100) 0.010s passed
testCachingIndexedFastaReaderTwoStage[3](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 1) 0.023s passed
testCachingIndexedFastaReaderTwoStage[4](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 10) 0.021s passed
testCachingIndexedFastaReaderTwoStage[5](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 100) 0.022s passed
testCachingIndexedFastaReaderTwoStage[6](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.038s passed
testCachingIndexedFastaReaderTwoStage[7](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.037s passed
testCachingIndexedFastaReaderTwoStage[8](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.038s passed
testCachingIndexedFastaReaderTwoStage[9](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 1) 0.008s passed
testFailOnBadBase 0.005s passed
testIupacChanges 0.003s passed
testMixedCasesInExample 0.005s passed
testNonexistentReference 0.001s passed