| Test |
Duration |
Result |
| testCreate[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp17679659452421633428.tar.gz, true, MODERATE) |
0.001s |
passed |
| testCreate[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp27179530408075968636.fasta, false, MODERATE) |
0s |
passed |
| testCreate[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp3413113647634663522.vcf, true, MINIMAL) |
0.001s |
passed |
| testCreate[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp410132640400033570685.fasta, false, MINIMAL) |
0s |
passed |
| testCreate[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp512955635306825884274.vcf, null, MINIMAL) |
0s |
passed |
| testCreate[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp615374382135870778535.xsv, false, null) |
0.001s |
passed |
| testCreate[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp715660738732913522697.vcf, null, null) |
0s |
passed |
| testGetDest[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp14685010427349283734.tar.gz, true, MODERATE) |
0s |
passed |
| testGetDest[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp26217068280851489325.fasta, false, MODERATE) |
0s |
passed |
| testGetDest[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp35910741608416107930.vcf, true, MINIMAL) |
0.001s |
passed |
| testGetDest[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp44179072193314559304.fasta, false, MINIMAL) |
0s |
passed |
| testGetDest[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp517774554155674762975.vcf, null, MINIMAL) |
0s |
passed |
| testGetDest[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp63299949245007513542.xsv, false, null) |
0s |
passed |
| testGetDest[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp76905161127717032221.vcf, null, null) |
0s |
passed |
| testGetSource[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp1573965226617807398.tar.gz, true, MODERATE) |
0s |
passed |
| testGetSource[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp211395003525505774227.fasta, false, MODERATE) |
0s |
passed |
| testGetSource[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp34760500301543262343.vcf, true, MINIMAL) |
0.001s |
passed |
| testGetSource[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp48885220975033200178.fasta, false, MINIMAL) |
0s |
passed |
| testGetSource[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp5352939913679657593.vcf, null, MINIMAL) |
0s |
passed |
| testGetSource[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp614580639952712388936.xsv, false, null) |
0.001s |
passed |
| testGetSource[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp78720329012244242520.vcf, null, null) |
0s |
passed |
| testIsDoLogProgress[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp2030226742822397582.tar.gz, true, MODERATE) |
0s |
passed |
| testIsDoLogProgress[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp214770463896279428891.fasta, false, MODERATE) |
0s |
passed |
| testIsDoLogProgress[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp311865694538924514229.vcf, true, MINIMAL) |
0.001s |
passed |
| testIsDoLogProgress[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp415500782144438995181.fasta, false, MINIMAL) |
0s |
passed |
| testIsDoLogProgress[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp59813979274360851704.vcf, null, MINIMAL) |
0s |
passed |
| testIsDoLogProgress[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp612325861289565329934.xsv, false, null) |
0.001s |
passed |
| testIsDoLogProgress[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp78986385884033965786.vcf, null, null) |
0s |
passed |
| testIsOverwriteExisting[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp11506310582870033126.tar.gz, true, MODERATE) |
0s |
passed |
| testIsOverwriteExisting[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp211137393018909681106.fasta, false, MODERATE) |
0s |
passed |
| testIsOverwriteExisting[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp32579176734610224096.vcf, true, MINIMAL) |
0.001s |
passed |
| testIsOverwriteExisting[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp425975452280631184.fasta, false, MINIMAL) |
0s |
passed |
| testIsOverwriteExisting[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp51858379235958762942.vcf, null, MINIMAL) |
0s |
passed |
| testIsOverwriteExisting[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp610509102138363215913.xsv, false, null) |
0.001s |
passed |
| testIsOverwriteExisting[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp72830477062783273236.vcf, null, null) |
0s |
passed |
| testSetOverwriteExisting[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp1413253719003349262.tar.gz, false, MODERATE, false) |
0.001s |
passed |
| testSetOverwriteExisting[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp9874101520460196854.tar.gz, true, MODERATE, true) |
0s |
passed |
| testSetVerbosity[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp7277323267503222412.tar.gz, true, MODERATE, MODERATE) |
0.001s |
passed |
| testSetVerbosity[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp4957307959412874583.tar.gz, true, MINIMAL, MINIMAL) |
0s |
passed |
| testSetVerbosity[2](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp16892852216211758405.tar.gz, true, SILENT, SILENT) |
0s |
passed |
| testSetVerbosity[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp15832014721105726681.tar.gz, true, VERBOSE, VERBOSE) |
0.001s |
passed |
| testSetVerbosity[4](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp13924725372669835799.tar.gz, true, null, MODERATE) |
0s |
passed |