Class org.broadinstitute.hellbender.utils.samples.SampleDBUnitTest

14

tests

0

failures

0

ignored

0.005s

duration

100%

successful

Tests

Test Duration Result
getFamilies 0.001s passed
getFamily 0s passed
getFamilyIDs 0.001s passed
loadAndMergeConsistentData 0.001s passed
loadDuplicateData 0s passed
loadFamilyIDs 0.001s passed
loadInconsistentData 0s passed
loadNonExistentFile 0s passed
loadPEDFile 0s passed
loadPEDString 0s passed
testAddSamplesFromSampleNames 0s passed
testGetFounderIds 0s passed
testGetTrios 0.001s passed
testGetTriosMultipleKids 0s passed

Standard error

17:50:09.973 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
17:50:09.974 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
17:50:09.975 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
17:50:09.975 WARN  PedReader - Reading PED string: "fam1 kid dad   mom   1 2" with missing fields: []
17:50:09.976 WARN  PedReader - Reading PED string: "fam1 kid dad   mom   1 2" with missing fields: []
17:50:09.976 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
17:50:09.977 WARN  PedReader - Reading PED string: "fam1 kid 0   0   2 2" with missing fields: []
17:50:09.979 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2" with missing fields: []
17:50:09.980 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam4 kid4 dad4 0 1 2
fam4 dad4 0   0   1 1
fam5 kid2 dad2 mom2 1 2
fam5 kid3 dad2 mom2 1 2
fam5 dad2 0   0   1 1
fam5 mom2 0   0   2 2" with missing fields: []
17:50:09.980 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
17:50:09.981 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam4 kid4 dad4 0 1 2
fam4 dad4 0   0   1 1
fam5 kid2 dad2 mom2 1 2
fam5 kid3 dad2 mom2 1 2
fam5 dad2 0   0   1 1
fam5 mom2 0   0   2 2" with missing fields: []