Class org.broadinstitute.hellbender.utils.smithwaterman.SmithWatermanIntelAlignerUnitTest

all > org.broadinstitute.hellbender.utils.smithwaterman > SmithWatermanIntelAlignerUnitTest
14

tests
0

failures
14

ignored
0.010s

duration
-

successful

Tests

Test Duration Result
testDegenerateAlignmentWithIndelsAtBothEnds - ignored
testForIdenticalAlignmentsWithDifferingFlankLengths - ignored
testIndelsAtStartAndEnd - ignored
testOddNoAlignment[0](AAAGACTACTG, AACGGACACTG, org.broadinstitute.gatk.nativebindings.smithwaterman.SWParameters@6aa7b47b, 1, 2M2I3M1D4M) - ignored
testOddNoAlignment[1](AAAGACTACTG, AACGGACACTG, org.broadinstitute.gatk.nativebindings.smithwaterman.SWParameters@3f3c7536, 0, 11M) - ignored
testReadAlignedToRefComplexAlignment[0](AAAGGACTGACTG, ACTGACTGACTG, 1, 12M) - ignored
testSubstringMatchLong[0](359, 7M, SOFTCLIP) - ignored
testSubstringMatchLong[1](0, 1M358D6M29D, INDEL) - ignored
testSubstringMatchLong[2](0, 1M1D6M, LEADING_INDEL) - ignored
testSubstringMatchLong[3](359, 7M, IGNORE) - ignored
testSubstringMatch[0](3, 5M, SOFTCLIP) - ignored
testSubstringMatch[1](0, 3D5M, INDEL) - ignored
testSubstringMatch[2](0, 3D5M, LEADING_INDEL) - ignored
testSubstringMatch[3](3, 5M, IGNORE) - ignored

Standard error

17:50:09.991 WARN  gatk - testDegenerateAlignmentWithIndelsAtBothEnds
17:50:09.993 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils4536619585865027711.so: /tmp/libgkl_utils4536619585865027711.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:09.993 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:09.994 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils12493177179562738266.so: /tmp/libgkl_utils12493177179562738266.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:09.994 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:09.995 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils6164949065141663897.so: /tmp/libgkl_utils6164949065141663897.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:09.995 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:09.995 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils13749279741180669221.so: /tmp/libgkl_utils13749279741180669221.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:09.996 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:09.996 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils15522350541345152043.so: /tmp/libgkl_utils15522350541345152043.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:09.996 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:09.997 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils208524303213860638.so: /tmp/libgkl_utils208524303213860638.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:09.997 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:09.998 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils12766180870768276982.so: /tmp/libgkl_utils12766180870768276982.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:09.998 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:09.998 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils17206017207933585130.so: /tmp/libgkl_utils17206017207933585130.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:09.998 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:09.999 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils1242890215700880650.so: /tmp/libgkl_utils1242890215700880650.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:09.999 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:09.999 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils10023864064771146993.so: /tmp/libgkl_utils10023864064771146993.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:09.999 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:10.000 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils3074204362436115546.so: /tmp/libgkl_utils3074204362436115546.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:10.000 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:10.001 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils480766573939143057.so: /tmp/libgkl_utils480766573939143057.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:10.001 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:10.001 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils6347078721796885370.so: /tmp/libgkl_utils6347078721796885370.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:10.001 WARN  IntelSmithWaterman - Intel GKL Utils not loaded
17:50:10.002 WARN  NativeLibraryLoader - Unable to load libgkl_utils.so from native/libgkl_utils.so (/tmp/libgkl_utils4844195611354691348.so: /tmp/libgkl_utils4844195611354691348.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:50:10.002 WARN  IntelSmithWaterman - Intel GKL Utils not loaded