Class org.broadinstitute.hellbender.tools.spark.pipelines.metrics.MeanQualityByCycleSparkIntegrationTest
Tests
| Test |
Duration |
Result |
| test[0](first5000a.bam, null) |
1.830s |
passed |
| test[1](first5000a.cram, /gatkCloneMountPoint/src/test/resources/large/human_g1k_v37.20.21.fasta) |
0.837s |
passed |
Standard error
21:01:32.514 INFO BlockManagerInfo - Removed broadcast_27_piece0 on localhost:40435 in memory (size: 50.1 KiB, free: 1919.4 MiB)
21:01:32.516 INFO BlockManagerInfo - Removed broadcast_38_piece0 on localhost:40435 in memory (size: 239.0 B, free: 1919.4 MiB)
21:01:32.518 INFO BlockManagerInfo - Removed broadcast_28_piece0 on localhost:40435 in memory (size: 4.7 KiB, free: 1919.4 MiB)
21:01:32.520 INFO BlockManagerInfo - Removed broadcast_26_piece0 on localhost:40435 in memory (size: 2.7 KiB, free: 1919.4 MiB)
21:01:32.522 INFO BlockManagerInfo - Removed broadcast_40_piece0 on localhost:40435 in memory (size: 104.1 KiB, free: 1919.5 MiB)
21:01:32.524 INFO BlockManagerInfo - Removed broadcast_42_piece0 on localhost:40435 in memory (size: 10.2 KiB, free: 1919.6 MiB)
21:01:32.527 INFO BlockManagerInfo - Removed broadcast_30_piece0 on localhost:40435 in memory (size: 10.2 KiB, free: 1919.6 MiB)
21:01:32.531 INFO BlockManagerInfo - Removed broadcast_36_piece0 on localhost:40435 in memory (size: 239.0 B, free: 1919.6 MiB)
21:01:32.535 INFO BlockManagerInfo - Removed broadcast_37_piece0 on localhost:40435 in memory (size: 50.1 KiB, free: 1919.6 MiB)
21:01:32.538 INFO BlockManagerInfo - Removed broadcast_29_piece0 on localhost:40435 in memory (size: 8.1 KiB, free: 1919.6 MiB)
21:01:32.541 INFO BlockManagerInfo - Removed broadcast_33_piece0 on localhost:40435 in memory (size: 153.7 KiB, free: 1919.8 MiB)
21:01:32.543 INFO BlockManagerInfo - Removed broadcast_35_piece0 on localhost:40435 in memory (size: 10.2 KiB, free: 1919.8 MiB)
21:01:32.545 INFO BlockManagerInfo - Removed broadcast_34_piece0 on localhost:40435 in memory (size: 8.1 KiB, free: 1919.8 MiB)
21:01:32.546 INFO BlockManagerInfo - Removed broadcast_32_piece0 on localhost:40435 in memory (size: 50.1 KiB, free: 1919.8 MiB)
21:01:32.548 INFO BlockManagerInfo - Removed broadcast_31_piece0 on localhost:40435 in memory (size: 50.1 KiB, free: 1919.9 MiB)
21:01:32.553 INFO BlockManagerInfo - Removed broadcast_39_piece0 on localhost:40435 in memory (size: 50.1 KiB, free: 1919.9 MiB)
21:01:32.555 INFO BlockManagerInfo - Removed broadcast_41_piece0 on localhost:40435 in memory (size: 8.1 KiB, free: 1919.9 MiB)
[October 24, 2025 at 9:01:33 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.MeanQualityByCycleSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[October 24, 2025 at 9:01:34 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.MeanQualityByCycleSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=689963008