Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest

tests

failures

ignored

8.993s

duration

100%

successful

Tests
Standard error

Tests

Test	Duration	Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags)	0.914s	passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show())	1.017s	passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0)	0.043s	passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null)	0.041s	passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null)	2.417s	passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2)	0.103s	passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1)	0.891s	passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100)	0.992s	passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4)	0.108s	passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0)	1.500s	passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0)	0.122s	passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2)	0.353s	passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2)	0.165s	passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3)	0.327s	passed

Standard error

21:04:15.557 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1809523662.txt
21:04:16.472 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1411708182.txt
21:04:17.490 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--61148237.txt
21:04:17.534 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--110127553.txt
21:04:17.638 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-309492515.txt
21:04:18.529 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--688616929.txt
21:04:19.521 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1571854133.txt
21:04:19.630 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2105263783.txt
21:04:21.132 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--542346174.txt
21:04:21.255 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1474700883.txt
21:04:21.608 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1822089685.txt
21:04:21.774 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--534179434.txt
21:04:22.102 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2011967206.txt
21:04:22.143 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1070209399.txt