Class org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotationsIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.vqsr.scalable > ExtractVariantAnnotationsIntegrationTest
12

tests
0

failures
0

ignored
4.605s

duration
100%

successful

Tests

Test Duration Result
testValidInputs[0](extract.nonAS.snp.pos, --variant /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/input/small_callset_low_threshold.sites-only.chr1.1-10M.vcf --do-not-gzip-vcf-output --add-output-vcf-command-line false --annotation DP --annotation FS --annotation MQ --annotation MQRankSum --annotation QD --annotation ReadPosRankSum --annotation SOR --mode SNP --resource:omni-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.1-5M.vcf.gz --resource:omni-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.5M-10M.vcf.gz) 0.580s passed
testValidInputs[10](extract.AS.snpIndel.pos, --variant /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/input/small_callset_low_threshold.sites-only.chr1.1-10M.vcf --do-not-gzip-vcf-output --add-output-vcf-command-line false --annotation AS_FS --annotation AS_MQ --annotation AS_MQRankSum --annotation AS_QD --annotation AS_ReadPosRankSum --annotation AS_SOR --mode SNP --resource:omni-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.1-5M.vcf.gz --resource:omni-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.5M-10M.vcf.gz --mode INDEL --resource:mills-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.1-5M.vcf.gz --resource:mills-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.5M-10M.vcf.gz) 0.288s passed
testValidInputs[11](extract.AS.snpIndel.posUn, --variant /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/input/small_callset_low_threshold.sites-only.chr1.1-10M.vcf --do-not-gzip-vcf-output --add-output-vcf-command-line false --annotation AS_FS --annotation AS_MQ --annotation AS_MQRankSum --annotation AS_QD --annotation AS_ReadPosRankSum --annotation AS_SOR --mode SNP --resource:omni-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.1-5M.vcf.gz --resource:omni-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.5M-10M.vcf.gz --mode INDEL --resource:mills-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.1-5M.vcf.gz --resource:mills-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.5M-10M.vcf.gz --maximum-number-of-unlabeled-variants 100) 0.404s passed
testValidInputs[1](extract.nonAS.snp.posUn, --variant /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/input/small_callset_low_threshold.sites-only.chr1.1-10M.vcf --do-not-gzip-vcf-output --add-output-vcf-command-line false --annotation DP --annotation FS --annotation MQ --annotation MQRankSum --annotation QD --annotation ReadPosRankSum --annotation SOR --mode SNP --resource:omni-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.1-5M.vcf.gz --resource:omni-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.5M-10M.vcf.gz --maximum-number-of-unlabeled-variants 100) 0.415s passed
testValidInputs[2](extract.nonAS.indel.pos, --variant /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/input/small_callset_low_threshold.sites-only.chr1.1-10M.vcf --do-not-gzip-vcf-output --add-output-vcf-command-line false --annotation DP --annotation FS --annotation MQ --annotation MQRankSum --annotation QD --annotation ReadPosRankSum --annotation SOR --mode INDEL --resource:mills-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.1-5M.vcf.gz --resource:mills-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.5M-10M.vcf.gz) 0.365s passed
testValidInputs[3](extract.nonAS.indel.posUn, --variant /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/input/small_callset_low_threshold.sites-only.chr1.1-10M.vcf --do-not-gzip-vcf-output --add-output-vcf-command-line false --annotation DP --annotation FS --annotation MQ --annotation MQRankSum --annotation QD --annotation ReadPosRankSum --annotation SOR --mode INDEL --resource:mills-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.1-5M.vcf.gz --resource:mills-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.5M-10M.vcf.gz --maximum-number-of-unlabeled-variants 100) 0.381s passed
testValidInputs[4](extract.nonAS.snpIndel.pos, --variant /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/input/small_callset_low_threshold.sites-only.chr1.1-10M.vcf --do-not-gzip-vcf-output --add-output-vcf-command-line false --annotation DP --annotation FS --annotation MQ --annotation MQRankSum --annotation QD --annotation ReadPosRankSum --annotation SOR --mode SNP --resource:omni-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.1-5M.vcf.gz --resource:omni-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.5M-10M.vcf.gz --mode INDEL --resource:mills-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.1-5M.vcf.gz --resource:mills-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.5M-10M.vcf.gz) 0.495s passed
testValidInputs[5](extract.nonAS.snpIndel.posUn, --variant /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/input/small_callset_low_threshold.sites-only.chr1.1-10M.vcf --do-not-gzip-vcf-output --add-output-vcf-command-line false --annotation DP --annotation FS --annotation MQ --annotation MQRankSum --annotation QD --annotation ReadPosRankSum --annotation SOR --mode SNP --resource:omni-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.1-5M.vcf.gz --resource:omni-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.5M-10M.vcf.gz --mode INDEL --resource:mills-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.1-5M.vcf.gz --resource:mills-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.5M-10M.vcf.gz --maximum-number-of-unlabeled-variants 100) 0.531s passed
testValidInputs[6](extract.AS.snp.pos, --variant /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/input/small_callset_low_threshold.sites-only.chr1.1-10M.vcf --do-not-gzip-vcf-output --add-output-vcf-command-line false --annotation AS_FS --annotation AS_MQ --annotation AS_MQRankSum --annotation AS_QD --annotation AS_ReadPosRankSum --annotation AS_SOR --mode SNP --resource:omni-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.1-5M.vcf.gz --resource:omni-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.5M-10M.vcf.gz) 0.378s passed
testValidInputs[7](extract.AS.snp.posUn, --variant /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/input/small_callset_low_threshold.sites-only.chr1.1-10M.vcf --do-not-gzip-vcf-output --add-output-vcf-command-line false --annotation AS_FS --annotation AS_MQ --annotation AS_MQRankSum --annotation AS_QD --annotation AS_ReadPosRankSum --annotation AS_SOR --mode SNP --resource:omni-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.1-5M.vcf.gz --resource:omni-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/1000G_omni2.5.hg38.chr1.5M-10M.vcf.gz --maximum-number-of-unlabeled-variants 100) 0.289s passed
testValidInputs[8](extract.AS.indel.pos, --variant /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/input/small_callset_low_threshold.sites-only.chr1.1-10M.vcf --do-not-gzip-vcf-output --add-output-vcf-command-line false --annotation AS_FS --annotation AS_MQ --annotation AS_MQRankSum --annotation AS_QD --annotation AS_ReadPosRankSum --annotation AS_SOR --mode INDEL --resource:mills-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.1-5M.vcf.gz --resource:mills-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.5M-10M.vcf.gz) 0.228s passed
testValidInputs[9](extract.AS.indel.posUn, --variant /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/input/small_callset_low_threshold.sites-only.chr1.1-10M.vcf --do-not-gzip-vcf-output --add-output-vcf-command-line false --annotation AS_FS --annotation AS_MQ --annotation AS_MQRankSum --annotation AS_QD --annotation AS_ReadPosRankSum --annotation AS_SOR --mode INDEL --resource:mills-training,training=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.1-5M.vcf.gz --resource:mills-calibration,calibration=true /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.5M-10M.vcf.gz --maximum-number-of-unlabeled-variants 100) 0.251s passed

Standard output

dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found

Standard error

[November 26, 2025 at 6:46:32 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotations done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[November 26, 2025 at 6:46:33 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotations done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[November 26, 2025 at 6:46:33 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotations done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[November 26, 2025 at 6:46:34 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotations done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[November 26, 2025 at 6:46:34 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotations done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[November 26, 2025 at 6:46:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotations done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1176502272
[November 26, 2025 at 6:46:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotations done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1176502272
[November 26, 2025 at 6:46:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotations done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1176502272
[November 26, 2025 at 6:46:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotations done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1176502272
[November 26, 2025 at 6:46:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotations done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1176502272
[November 26, 2025 at 6:46:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotations done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1176502272
[November 26, 2025 at 6:46:37 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.ExtractVariantAnnotations done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1176502272