Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
8.683s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.847s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 0.972s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.042s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.040s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 2.365s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.102s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.849s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 0.971s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.107s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.442s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.119s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.345s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.163s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.319s passed

Standard error

18:48:04.955 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-703575009.txt
18:48:05.803 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--933691986.txt
18:48:06.775 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-801999833.txt
18:48:06.817 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1843598442.txt
18:48:06.920 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1271099237.txt
18:48:07.769 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2043859546.txt
18:48:08.740 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1005536356.txt
18:48:08.848 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1437050683.txt
18:48:10.290 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-173766014.txt
18:48:10.410 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1952798889.txt
18:48:10.755 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1783948119.txt
18:48:10.918 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1658503012.txt
18:48:11.238 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--335303232.txt
18:48:11.279 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-324745088.txt