Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest

tests

failures

ignored

8.524s

duration

100%

successful

Tests
Standard error

Tests

Test	Duration	Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags)	0.874s	passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show())	0.981s	passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0)	0.044s	passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null)	0.042s	passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null)	1.749s	passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2)	0.104s	passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1)	0.878s	passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100)	1.003s	passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4)	0.110s	passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0)	1.762s	passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0)	0.122s	passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2)	0.353s	passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2)	0.174s	passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3)	0.328s	passed

Standard error

14:21:23.811 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1601940728.txt
14:21:24.685 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-661020624.txt
14:21:25.667 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--829669466.txt
14:21:25.711 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-474774490.txt
14:21:25.816 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1179157470.txt
14:21:26.695 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1274702115.txt
14:21:27.698 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--156137590.txt
14:21:27.808 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--256334967.txt
14:21:29.572 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-419215701.txt
14:21:29.694 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--583348896.txt
14:21:30.048 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1313287730.txt
14:21:30.223 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1901037497.txt
14:21:30.551 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1216917852.txt
14:21:30.594 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--289659217.txt