Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest
Tests
| Test |
Duration |
Result |
| testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) |
0.874s |
passed |
| testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) |
0.981s |
passed |
| testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) |
0.044s |
passed |
| testGATKPythonEnvironmentPackagePresent[10](argparse, null) |
0.042s |
passed |
| testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) |
1.749s |
passed |
| testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) |
0.104s |
passed |
| testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) |
0.878s |
passed |
| testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) |
1.003s |
passed |
| testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) |
0.110s |
passed |
| testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) |
1.762s |
passed |
| testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) |
0.122s |
passed |
| testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) |
0.353s |
passed |
| testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) |
0.174s |
passed |
| testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) |
0.328s |
passed |
Standard error
14:21:23.811 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1601940728.txt
14:21:24.685 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-661020624.txt
14:21:25.667 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--829669466.txt
14:21:25.711 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-474774490.txt
14:21:25.816 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1179157470.txt
14:21:26.695 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1274702115.txt
14:21:27.698 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--156137590.txt
14:21:27.808 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--256334967.txt
14:21:29.572 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-419215701.txt
14:21:29.694 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--583348896.txt
14:21:30.048 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1313287730.txt
14:21:30.223 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1901037497.txt
14:21:30.551 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1216917852.txt
14:21:30.594 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--289659217.txt