Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
9.202s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.977s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 1.118s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.048s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.045s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 1.799s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.114s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.983s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 1.114s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.121s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.847s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.132s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.378s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.179s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.347s passed

Standard error

17:23:43.724 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--212029807.txt
17:23:44.698 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--983805959.txt
17:23:45.818 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-636773520.txt
17:23:45.867 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-107032303.txt
17:23:45.981 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1521433937.txt
17:23:46.964 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-163465149.txt
17:23:48.078 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1776151472.txt
17:23:48.200 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1741834333.txt
17:23:50.048 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-197640200.txt
17:23:50.181 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--175327010.txt
17:23:50.560 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2128068870.txt
17:23:50.740 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1306875954.txt
17:23:51.088 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--606390995.txt
17:23:51.133 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--337372939.txt