Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest

tests

failures

ignored

8.718s

duration

100%

successful

Tests
Standard error

Tests

Test	Duration	Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags)	0.863s	passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show())	0.983s	passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0)	0.042s	passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null)	0.040s	passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null)	2.317s	passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2)	0.103s	passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1)	0.855s	passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100)	0.984s	passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4)	0.109s	passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0)	1.464s	passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0)	0.122s	passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2)	0.346s	passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2)	0.170s	passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3)	0.320s	passed

Standard error

13:16:19.725 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-345647127.txt
13:16:20.588 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-692307332.txt
13:16:21.572 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-198631540.txt
13:16:21.614 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1306359759.txt
13:16:21.718 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-183472241.txt
13:16:22.572 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-604825729.txt
13:16:23.557 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1282906093.txt
13:16:23.667 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-6298456.txt
13:16:25.132 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-776235108.txt
13:16:25.253 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-749405604.txt
13:16:25.600 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1690340298.txt
13:16:25.770 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-171515772.txt
13:16:26.091 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--179997878.txt
13:16:26.132 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2100960512.txt