Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
9.078s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.923s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 0.980s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.042s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.045s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 1.880s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.100s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 1.024s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 1.093s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.121s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.847s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.124s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.373s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.182s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.344s passed

Standard error

17:47:25.413 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--14955869.txt
17:47:26.337 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--323810385.txt
17:47:27.316 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1687956766.txt
17:47:27.360 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--930584604.txt
17:47:27.460 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--199541234.txt
17:47:28.486 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1725092612.txt
17:47:29.580 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--311191467.txt
17:47:29.702 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1834327767.txt
17:47:31.548 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1656394704.txt
17:47:31.673 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1872755875.txt
17:47:32.047 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1664241400.txt
17:47:32.232 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-130248131.txt
17:47:32.573 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--864857980.txt
17:47:32.619 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--360686112.txt