Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
8.974s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.909s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 1.094s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.047s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.046s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 1.793s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.112s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.904s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 1.099s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.118s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.807s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.134s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.377s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.186s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.348s passed

Standard error

17:56:01.398 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1658414152.txt
17:56:02.308 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--248818737.txt
17:56:03.403 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1162143674.txt
17:56:03.450 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--102171531.txt
17:56:03.562 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-390216637.txt
17:56:04.467 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--895098516.txt
17:56:05.567 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1041950231.txt
17:56:05.686 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-717717543.txt
17:56:07.493 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--87017430.txt
17:56:07.627 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1164933254.txt
17:56:08.005 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--382970054.txt
17:56:08.192 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-782660140.txt
17:56:08.540 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1330874860.txt
17:56:08.585 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1323629095.txt