Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
9.238s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.939s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 1.121s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.048s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.045s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 1.881s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.112s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.942s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 1.106s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.118s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.863s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.132s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.387s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.189s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.355s passed

Standard error

18:48:37.134 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--397751160.txt
18:48:38.074 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1426429705.txt
18:48:39.196 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-559410150.txt
18:48:39.244 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-427434120.txt
18:48:39.357 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-406018191.txt
18:48:40.300 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1248759732.txt
18:48:41.407 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1367964904.txt
18:48:41.527 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1596538727.txt
18:48:43.389 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--961075685.txt
18:48:43.522 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--395824827.txt
18:48:43.910 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--424877107.txt
18:48:44.099 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--362746238.txt
18:48:44.455 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--2016452636.txt
18:48:44.501 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--845884765.txt