Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
9.191s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.924s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 1.133s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.047s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.047s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 1.878s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.113s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.917s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 1.113s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.119s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.831s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.136s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.385s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.188s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.360s passed

Standard error

14:59:30.004 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-243951342.txt
14:59:30.929 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-8788190.txt
14:59:32.063 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-549597338.txt
14:59:32.111 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--986324107.txt
14:59:32.225 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1101851293.txt
14:59:33.143 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1087358235.txt
14:59:34.256 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-427120568.txt
14:59:34.376 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1293680363.txt
14:59:36.207 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1191855163.txt
14:59:36.344 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-288703412.txt
14:59:36.729 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1894313351.txt
14:59:36.916 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--52946818.txt
14:59:37.277 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-568193400.txt
14:59:37.326 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1636661871.txt