Class org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectBaseDistributionByCycleSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines.metrics > CollectBaseDistributionByCycleSparkIntegrationTest
9

tests
0

failures
0

ignored
5.774s

duration
100%

successful

Tests

Test Duration Result
test[0](valid.bam, null, valid.CollectBaseDistributionByCycle.txt, true, false, false) 2.215s passed
test[1](valid.cram, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectBaseDistributionByCycle/valid.fasta, valid.CollectBaseDistributionByCycle.txt, true, false, false) 0.415s passed
test[2](first5000a.bam, null, CollectBaseDistributionByCycle.txt, true, false, false) 0.357s passed
test[3](first5000a.cram, /gatkCloneMountPoint/src/test/resources/large/human_g1k_v37.20.21.fasta, CollectBaseDistributionByCycle.txt, true, false, false) 0.668s passed
test[4](originalQuals.chr1.1-1K.bam, null, CollectBaseDistributionByCycle.origQuals.txt, true, false, false) 0.426s passed
test[5](example_pfFail_reads.bam, null, CollectBaseDistributionByCycle.pfReads.txt, true, false, false) 0.326s passed
test[6](example_pfFail_reads.bam, null, CollectBaseDistributionByCycle.pfOnly.txt, true, true, false) 0.333s passed
test[7](unmapped.bam, null, CollectBaseDistributionByCycle.unmapped.ALIGNED_READS_ONLY_false.txt, true, false, false) 0.529s passed
test[8](unmapped.bam, null, CollectBaseDistributionByCycle.unmapped.ALIGNED_READS_ONLY_true.txt, false, false, true) 0.505s passed

Standard error

[February 2, 2026 at 1:14:05 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectBaseDistributionByCycleSpark done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1398800384
[February 2, 2026 at 1:14:05 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectBaseDistributionByCycleSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=937426944
[February 2, 2026 at 1:14:06 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectBaseDistributionByCycleSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=937426944
[February 2, 2026 at 1:14:06 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectBaseDistributionByCycleSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=937426944
[February 2, 2026 at 1:14:07 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectBaseDistributionByCycleSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1084227584
[February 2, 2026 at 1:14:07 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectBaseDistributionByCycleSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1084227584
[February 2, 2026 at 1:14:07 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectBaseDistributionByCycleSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1084227584
[February 2, 2026 at 1:14:08 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectBaseDistributionByCycleSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1084227584
[February 2, 2026 at 1:14:08 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectBaseDistributionByCycleSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1084227584