Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest
Tests
| Test |
Duration |
Result |
| testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) |
0.841s |
passed |
| testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) |
0.953s |
passed |
| testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) |
0.042s |
passed |
| testGATKPythonEnvironmentPackagePresent[10](argparse, null) |
0.040s |
passed |
| testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) |
2.334s |
passed |
| testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) |
0.103s |
passed |
| testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) |
0.835s |
passed |
| testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) |
0.956s |
passed |
| testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) |
0.106s |
passed |
| testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) |
1.427s |
passed |
| testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) |
0.119s |
passed |
| testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) |
0.340s |
passed |
| testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) |
0.169s |
passed |
| testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) |
0.316s |
passed |
Standard error
13:17:01.217 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1361532043.txt
13:17:02.058 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1796039008.txt
13:17:03.012 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1726140482.txt
13:17:03.056 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1029681697.txt
13:17:03.159 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-105610.txt
13:17:03.994 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--2139464068.txt
13:17:04.949 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-227276306.txt
13:17:05.056 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1239743258.txt
13:17:06.485 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1561149662.txt
13:17:06.604 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--484670182.txt
13:17:06.945 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-798185699.txt
13:17:07.114 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--91495307.txt
13:17:07.431 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1661864696.txt
13:17:07.471 INFO StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1587924662.txt