Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
8.581s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.841s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 0.953s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.042s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.040s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 2.334s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.103s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.835s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 0.956s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.106s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.427s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.119s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.340s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.169s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.316s passed

Standard error

13:17:01.217 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1361532043.txt
13:17:02.058 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1796039008.txt
13:17:03.012 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1726140482.txt
13:17:03.056 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1029681697.txt
13:17:03.159 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-105610.txt
13:17:03.994 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--2139464068.txt
13:17:04.949 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-227276306.txt
13:17:05.056 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1239743258.txt
13:17:06.485 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1561149662.txt
13:17:06.604 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--484670182.txt
13:17:06.945 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-798185699.txt
13:17:07.114 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--91495307.txt
13:17:07.431 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1661864696.txt
13:17:07.471 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1587924662.txt