Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
8.622s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.846s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 0.975s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.043s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.039s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 2.324s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.102s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.851s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 0.969s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.106s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.426s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.119s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.339s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.169s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.314s passed

Standard error

00:15:57.520 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-599935439.txt
00:15:58.366 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1543407563.txt
00:15:59.343 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--372623306.txt
00:15:59.386 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-950115387.txt
00:15:59.487 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1632005011.txt
00:16:00.339 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-617285463.txt
00:16:01.310 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1905688751.txt
00:16:01.416 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1117621586.txt
00:16:02.843 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--889773980.txt
00:16:02.961 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1036005829.txt
00:16:03.301 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2000718665.txt
00:16:03.470 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1316145805.txt
00:16:03.785 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2059428358.txt
00:16:03.824 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1568490378.txt