Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
8.342s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.815s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 0.937s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.041s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.039s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 2.245s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.097s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.815s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 0.936s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.105s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.384s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.119s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.334s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.165s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.310s passed

Standard error

22:04:36.590 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-600548307.txt
22:04:37.407 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1420063410.txt
22:04:38.345 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--470856742.txt
22:04:38.386 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1105928273.txt
22:04:38.484 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--614451245.txt
22:04:39.299 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-582243958.txt
22:04:40.236 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1841333595.txt
22:04:40.342 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1231598675.txt
22:04:41.727 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1348077494.txt
22:04:41.846 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-100788417.txt
22:04:42.181 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-866371175.txt
22:04:42.346 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--2120244512.txt
22:04:42.657 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1071058031.txt
22:04:42.696 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-592870233.txt