Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
8.364s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.811s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 0.938s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.042s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.040s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 2.238s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.099s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.812s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 0.945s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.108s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.385s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.117s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.347s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.169s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.313s passed

Standard error

00:10:28.816 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1810112855.txt
00:10:29.627 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1960596232.txt
00:10:30.566 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2081286155.txt
00:10:30.608 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-401510813.txt
00:10:30.707 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--236119676.txt
00:10:31.520 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-492720026.txt
00:10:32.465 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1773204779.txt
00:10:32.573 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-482573703.txt
00:10:33.959 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--129125345.txt
00:10:34.076 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-887650592.txt
00:10:34.424 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1894568213.txt
00:10:34.594 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--630024139.txt
00:10:34.907 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1209149197.txt
00:10:34.946 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--542482342.txt