Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
9.251s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.932s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 1.068s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.044s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.041s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 2.440s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.106s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.916s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 1.076s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.113s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.535s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.123s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.355s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.175s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.327s passed

Standard error

20:53:56.597 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1920717786.txt
20:53:57.529 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1225794203.txt
20:53:58.597 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-59036458.txt
20:53:58.643 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--340375286.txt
20:53:58.750 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--877571061.txt
20:53:59.667 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1230197808.txt
20:54:00.744 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2040551742.txt
20:54:00.857 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-602705620.txt
20:54:02.393 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1597106808.txt
20:54:02.517 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1520823130.txt
20:54:02.873 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1731343457.txt
20:54:03.049 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2068660553.txt
20:54:03.376 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--860601366.txt
20:54:03.418 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1759937471.txt