Class org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest

all > org.broadinstitute.hellbender.engine > LocusWalkerByIntervalUnitTest
13

tests
0

failures
0

ignored
0.337s

duration
100%

successful

Tests

Test Duration Result
testOverlappingBasesCoverageInformation[0]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@19ed779e, [I@2dfde704) 0.036s passed
testOverlappingBasesCoverageInformation[10]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@54497a5, [I@36a74c18) 0.026s passed
testOverlappingBasesCoverageInformation[11]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@5bcafda3, [I@21996ae2) 0.025s passed
testOverlappingBasesCoverageInformation[12]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@375c6b98, [I@f22cf0e) 0.031s passed
testOverlappingBasesCoverageInformation[1]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@387f53cf, [I@2cda8be9) 0.020s passed
testOverlappingBasesCoverageInformation[2]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@4fa0e166, [I@22c5c530) 0.018s passed
testOverlappingBasesCoverageInformation[3]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@33d95295, [I@5e1fd72a) 0.018s passed
testOverlappingBasesCoverageInformation[4]([20:1000-2000, 20:2001-3000], [Lhtsjdk.samtools.util.Locatable;@559ff07, [I@510d8c03) 0.021s passed
testOverlappingBasesCoverageInformation[5]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@4893b980, [I@34a5dc29) 0.023s passed
testOverlappingBasesCoverageInformation[6]([20:1000-2000, 21:3001-4000], [Lhtsjdk.samtools.util.Locatable;@1626e651, [I@12e37ab2) 0.029s passed
testOverlappingBasesCoverageInformation[7]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@6bac4719, [I@2fb800ca) 0.038s passed
testOverlappingBasesCoverageInformation[8]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@7f446346, [I@7da660a1) 0.026s passed
testOverlappingBasesCoverageInformation[9]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@13d86de8, [I@385dae6a) 0.026s passed

Standard error

15:09:17.411 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.412 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.412 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.412 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.412 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.412 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.412 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.412 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.412 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.412 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.412 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.412 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.412 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.412 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.412 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.412 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.412 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.414 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
15:09:17.414 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.414 INFO  ProgressMeter - Starting traversal
15:09:17.415 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.428 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.428 INFO  ProgressMeter -              20:1999              0.0                  1001        4620000.0
15:09:17.429 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
15:09:17.429 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:17.444 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.444 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.444 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.444 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.444 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.445 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.445 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.445 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.445 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.445 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.445 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.445 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.445 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.445 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.445 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.445 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.445 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.447 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
15:09:17.447 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.447 INFO  ProgressMeter - Starting traversal
15:09:17.447 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.449 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.449 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
15:09:17.449 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
15:09:17.449 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:17.464 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.464 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.464 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.464 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.464 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.464 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.464 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.464 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.464 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.464 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.465 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.465 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.465 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.465 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.465 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.465 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.465 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.466 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
15:09:17.466 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.466 INFO  ProgressMeter - Starting traversal
15:09:17.466 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.468 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.468 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
15:09:17.468 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
15:09:17.468 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:17.482 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.482 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.483 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.483 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.483 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.483 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.483 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.483 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.483 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.483 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.483 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.483 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.483 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.483 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.483 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.483 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.483 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.485 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
15:09:17.485 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.485 INFO  ProgressMeter - Starting traversal
15:09:17.485 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.487 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.487 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
15:09:17.487 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
15:09:17.487 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:17.503 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.503 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.503 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.503 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.503 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.503 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.503 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.503 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.503 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.503 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.503 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.503 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.503 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.503 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.503 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.503 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.503 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.505 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
15:09:17.505 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.505 INFO  ProgressMeter - Starting traversal
15:09:17.505 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.508 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.508 INFO  ProgressMeter -              20:2999              0.0                  2001       40020000.0
15:09:17.508 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
15:09:17.508 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:17.524 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.524 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.524 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.525 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.525 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.525 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.525 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.525 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.525 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.525 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.525 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.525 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.525 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.525 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.525 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.525 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.525 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.527 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
15:09:17.527 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.527 INFO  ProgressMeter - Starting traversal
15:09:17.527 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.532 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.532 INFO  ProgressMeter -              20:3999              0.0                  2001       24012000.0
15:09:17.532 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
15:09:17.532 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:17.554 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.554 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.554 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.554 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.554 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.554 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.554 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.554 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.554 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.554 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.555 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.555 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.555 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.555 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.555 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.555 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.555 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.557 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
15:09:17.557 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.557 INFO  ProgressMeter - Starting traversal
15:09:17.557 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.561 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.561 INFO  ProgressMeter -              21:3999              0.0                  2001       30015000.0
15:09:17.561 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
15:09:17.561 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:17.583 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.583 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.584 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.584 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.584 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.584 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.584 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.584 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.584 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.584 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.584 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.584 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.584 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.584 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.584 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.584 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.584 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.586 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
15:09:17.586 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.586 INFO  ProgressMeter - Starting traversal
15:09:17.586 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.599 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.599 INFO  ProgressMeter -              20:3999              0.0                  2001        9235384.6
15:09:17.599 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
15:09:17.599 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:17.621 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.622 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.622 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.622 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.622 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.622 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.622 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.622 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.622 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.622 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.622 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.622 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.622 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.622 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.622 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.622 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.622 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.624 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
15:09:17.624 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.624 INFO  ProgressMeter - Starting traversal
15:09:17.624 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.626 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.626 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
15:09:17.626 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
15:09:17.626 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:17.648 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.648 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.648 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.648 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.648 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.648 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.648 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.648 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.648 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.648 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.648 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.648 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.648 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.648 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.648 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.648 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.648 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.650 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
15:09:17.650 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.650 INFO  ProgressMeter - Starting traversal
15:09:17.650 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.652 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.652 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
15:09:17.652 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
15:09:17.652 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:17.674 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.674 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.674 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.674 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.674 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.674 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.674 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.674 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.674 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.674 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.674 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.674 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.674 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.674 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.674 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.674 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.674 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.676 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
15:09:17.676 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.676 INFO  ProgressMeter - Starting traversal
15:09:17.676 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.678 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.678 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
15:09:17.678 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
15:09:17.678 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:17.700 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.700 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.700 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.700 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.700 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.700 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.700 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.700 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.700 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.700 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.700 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.700 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.700 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.700 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.700 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.701 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.701 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.702 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
15:09:17.702 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.702 INFO  ProgressMeter - Starting traversal
15:09:17.702 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.704 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.704 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
15:09:17.704 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
15:09:17.704 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:17.731 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.731 INFO  TestTransformedLocusWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:17.731 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:17.731 INFO  TestTransformedLocusWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:17.731 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:17.731 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 3:09:17 PM GMT
15:09:17.731 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.731 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
15:09:17.731 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:17.731 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:17.732 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:17.732 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:17.732 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
15:09:17.732 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
15:09:17.732 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
15:09:17.732 INFO  TestTransformedLocusWalker - Requester pays: disabled
15:09:17.732 INFO  TestTransformedLocusWalker - Initializing engine
15:09:17.734 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
15:09:17.734 INFO  TestTransformedLocusWalker - Done initializing engine
15:09:17.734 INFO  ProgressMeter - Starting traversal
15:09:17.734 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
15:09:17.735 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
15:09:17.735 INFO  ProgressMeter -              20:1999              0.0                  1001       60060000.0
15:09:17.735 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
15:09:17.735 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 3:09:17 PM GMT] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976