Class org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest

all > org.broadinstitute.hellbender.engine > MultiplePassReadWalkerUnitTest
tests
failures
ignored
0.285s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testIntervalFiltering[0](/count_reads_sorted.bam)	0.025s	passed
testIntervalFiltering[1](/count_reads_sorted.cram)	0.031s	passed
testPassCounts[0](0)	0.024s	passed
testPassCounts[1](1)	0.017s	passed
testPassCounts[2](2)	0.021s	passed
testPassCounts[3](5)	0.016s	passed
testPassCounts[4](25)	0.026s	passed
testRejectAttemptToIndexNonIndexableInput[0](/count_reads.bam)	0.020s	passed
testRejectAttemptToIndexNonIndexableInput[1](/count_reads.sam)	0.021s	passed
testRejectAttemptToIndexNonIndexableInput[2](/count_reads.cram)	0.020s	passed
testTwoPass[0](/count_reads.bam)	0.018s	passed
testTwoPass[1](/count_reads.sam)	0.021s	passed
testTwoPass[2](/count_reads.cram)	0.025s	passed
Standard error

15:09:18.096 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.096 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.096 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.096 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.096 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.097 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.097 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.097 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.097 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.097 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.097 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.097 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.097 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.097 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.097 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.097 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.097 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.102 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
15:09:18.103 INFO  dummyMultiplePassReadWalker - Done initializing engine
15:09:18.103 INFO  ProgressMeter - Starting traversal
15:09:18.103 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
15:09:18.104 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.105 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
15:09:18.105 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.105 INFO  ProgressMeter -             unmapped              0.0                    10         300000.0
15:09:18.105 INFO  ProgressMeter - Traversal complete. Processed 10 total reads in 0.0 minutes.
15:09:18.105 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:18.121 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.121 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.121 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.121 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.121 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.121 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.121 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.121 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.122 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.122 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.122 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.122 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.122 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.122 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.122 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.122 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.122 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.127 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
15:09:18.128 INFO  dummyMultiplePassReadWalker - Done initializing engine
15:09:18.128 INFO  ProgressMeter - Starting traversal
15:09:18.128 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
15:09:18.133 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.134 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
15:09:18.136 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.136 INFO  ProgressMeter -             unmapped              0.0                    10          75000.0
15:09:18.136 INFO  ProgressMeter - Traversal complete. Processed 10 total reads in 0.0 minutes.
15:09:18.136 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:18.159 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.159 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.159 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.159 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.159 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.159 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.159 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.159 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.160 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.160 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.160 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.160 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.160 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.160 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.160 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.160 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.160 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.161 INFO  dummyMultiplePassReadWalker - Done initializing engine
15:09:18.161 INFO  ProgressMeter - Starting traversal
15:09:18.161 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
15:09:18.162 INFO  ProgressMeter -             unmapped              0.0                     0              0.0
15:09:18.162 INFO  ProgressMeter - Traversal complete. Processed 0 total reads in 0.0 minutes.
15:09:18.162 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:18.176 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.177 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.177 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.177 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.177 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.177 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.177 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.177 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.177 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.177 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.177 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.177 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.177 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.177 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.177 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.177 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.177 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.177 INFO  dummyMultiplePassReadWalker - Done initializing engine
15:09:18.177 INFO  ProgressMeter - Starting traversal
15:09:18.177 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
15:09:18.178 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.178 INFO  ProgressMeter -             unmapped              0.0                     8         480000.0
15:09:18.178 INFO  ProgressMeter - Traversal complete. Processed 8 total reads in 0.0 minutes.
15:09:18.178 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:18.198 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.198 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.198 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.198 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.198 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.198 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.198 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.198 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.198 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.198 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.198 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.198 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.198 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.198 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.198 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.199 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.199 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.199 INFO  dummyMultiplePassReadWalker - Done initializing engine
15:09:18.199 INFO  ProgressMeter - Starting traversal
15:09:18.199 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
15:09:18.200 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.200 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
15:09:18.200 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.200 INFO  ProgressMeter -             unmapped              0.0                    16         960000.0
15:09:18.200 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
15:09:18.200 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:18.214 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.215 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.215 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.215 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.215 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.215 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.215 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.215 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.215 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.215 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.215 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.215 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.215 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.215 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.215 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.215 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.215 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.215 INFO  dummyMultiplePassReadWalker - Done initializing engine
15:09:18.215 INFO  ProgressMeter - Starting traversal
15:09:18.215 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
15:09:18.216 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.216 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
15:09:18.216 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.216 INFO  dummyMultiplePassReadWalker - Starting traversal pass 3
15:09:18.216 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.216 INFO  dummyMultiplePassReadWalker - Starting traversal pass 4
15:09:18.217 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.217 INFO  dummyMultiplePassReadWalker - Starting traversal pass 5
15:09:18.217 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.217 INFO  ProgressMeter -             unmapped              0.0                    40        1200000.0
15:09:18.217 INFO  ProgressMeter - Traversal complete. Processed 40 total reads in 0.0 minutes.
15:09:18.217 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:18.236 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.236 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.236 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.236 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.236 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.236 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.236 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.236 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.236 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.236 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.236 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.236 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.236 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.236 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.236 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.236 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.236 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.237 INFO  dummyMultiplePassReadWalker - Done initializing engine
15:09:18.237 INFO  ProgressMeter - Starting traversal
15:09:18.237 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
15:09:18.237 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.237 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
15:09:18.237 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.237 INFO  dummyMultiplePassReadWalker - Starting traversal pass 3
15:09:18.238 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.238 INFO  dummyMultiplePassReadWalker - Starting traversal pass 4
15:09:18.238 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.238 INFO  dummyMultiplePassReadWalker - Starting traversal pass 5
15:09:18.238 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.238 INFO  dummyMultiplePassReadWalker - Starting traversal pass 6
15:09:18.238 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.238 INFO  dummyMultiplePassReadWalker - Starting traversal pass 7
15:09:18.238 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.238 INFO  dummyMultiplePassReadWalker - Starting traversal pass 8
15:09:18.239 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.239 INFO  dummyMultiplePassReadWalker - Starting traversal pass 9
15:09:18.239 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.239 INFO  dummyMultiplePassReadWalker - Starting traversal pass 10
15:09:18.240 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.240 INFO  dummyMultiplePassReadWalker - Starting traversal pass 11
15:09:18.240 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.240 INFO  dummyMultiplePassReadWalker - Starting traversal pass 12
15:09:18.240 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.240 INFO  dummyMultiplePassReadWalker - Starting traversal pass 13
15:09:18.240 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.240 INFO  dummyMultiplePassReadWalker - Starting traversal pass 14
15:09:18.241 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.241 INFO  dummyMultiplePassReadWalker - Starting traversal pass 15
15:09:18.241 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.241 INFO  dummyMultiplePassReadWalker - Starting traversal pass 16
15:09:18.241 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.241 INFO  dummyMultiplePassReadWalker - Starting traversal pass 17
15:09:18.241 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.241 INFO  dummyMultiplePassReadWalker - Starting traversal pass 18
15:09:18.241 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.241 INFO  dummyMultiplePassReadWalker - Starting traversal pass 19
15:09:18.242 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.242 INFO  dummyMultiplePassReadWalker - Starting traversal pass 20
15:09:18.242 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.242 INFO  dummyMultiplePassReadWalker - Starting traversal pass 21
15:09:18.242 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.242 INFO  dummyMultiplePassReadWalker - Starting traversal pass 22
15:09:18.242 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.242 INFO  dummyMultiplePassReadWalker - Starting traversal pass 23
15:09:18.242 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.242 INFO  dummyMultiplePassReadWalker - Starting traversal pass 24
15:09:18.243 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.243 INFO  dummyMultiplePassReadWalker - Starting traversal pass 25
15:09:18.243 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.243 INFO  ProgressMeter -             unmapped              0.0                   200        2000000.0
15:09:18.243 INFO  ProgressMeter - Traversal complete. Processed 200 total reads in 0.0 minutes.
15:09:18.243 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:18.258 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.259 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.259 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.259 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.259 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.259 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.259 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.259 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.259 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.259 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.259 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.259 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.259 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.259 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.259 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.259 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.259 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.263 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
15:09:18.264 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:18.280 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.280 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.280 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.280 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.280 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.280 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.280 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.280 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.280 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.280 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.280 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.280 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.280 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.280 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.280 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.280 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.280 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.285 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
15:09:18.285 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:18.300 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.300 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.300 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.300 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.300 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.300 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.300 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.300 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.300 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.300 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.300 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.300 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.300 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.300 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.300 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.300 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.300 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.305 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
15:09:18.305 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:18.320 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.320 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.320 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.320 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.320 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.320 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.321 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.321 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.321 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.321 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.321 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.321 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.321 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.321 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.321 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.321 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.321 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.323 INFO  dummyMultiplePassReadWalker - Done initializing engine
15:09:18.323 INFO  ProgressMeter - Starting traversal
15:09:18.323 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
15:09:18.323 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.323 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
15:09:18.323 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.323 INFO  ProgressMeter -             unmapped              0.0                    16         Infinity
15:09:18.323 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
15:09:18.323 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:18.339 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.339 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.339 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.339 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.339 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.339 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.339 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.339 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.339 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.339 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.339 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.339 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.339 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.339 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.339 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.339 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.339 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.340 INFO  dummyMultiplePassReadWalker - Done initializing engine
15:09:18.340 INFO  ProgressMeter - Starting traversal
15:09:18.340 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
15:09:18.343 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.344 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
15:09:18.344 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.345 INFO  ProgressMeter -             unmapped              0.0                    16         240000.0
15:09:18.345 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
15:09:18.345 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976
15:09:18.363 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.363 INFO  dummyMultiplePassReadWalker - The Genome Analysis Toolkit (GATK) vafter_master_merge-284-g4157897-SNAPSHOT
15:09:18.363 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:09:18.363 INFO  dummyMultiplePassReadWalker - Executing as root@265a0ba1256d on Linux v6.14.0-1017-azure amd64
15:09:18.363 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
15:09:18.363 INFO  dummyMultiplePassReadWalker - Start Date/Time: March 4, 2026 at 3:09:18 PM GMT
15:09:18.363 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.363 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
15:09:18.363 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:09:18.363 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:09:18.363 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:09:18.363 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:09:18.363 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
15:09:18.363 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
15:09:18.363 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
15:09:18.363 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
15:09:18.363 INFO  dummyMultiplePassReadWalker - Initializing engine
15:09:18.365 INFO  dummyMultiplePassReadWalker - Done initializing engine
15:09:18.365 INFO  ProgressMeter - Starting traversal
15:09:18.365 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
15:09:18.368 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.369 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
15:09:18.371 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

15:09:18.371 INFO  ProgressMeter -             unmapped              0.0                    16         160000.0
15:09:18.371 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
15:09:18.371 INFO  dummyMultiplePassReadWalker - Shutting down engine
[March 4, 2026 at 3:09:18 PM GMT] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=813694976