Class org.broadinstitute.hellbender.engine.spark.datasources.ReadsSparkSinkUnitTest

all > org.broadinstitute.hellbender.engine.spark.datasources > ReadsSparkSinkUnitTest
47

tests
0

failures
47

ignored
0s

duration
-

successful

Tests

Test Duration Result
readsSinkHDFSTest[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, true, 100) - ignored
readsSinkHDFSTest[1](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, true, 1) - ignored
readsSinkHDFSTest[2](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, false, 100) - ignored
readsSinkHDFSTest[3](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, false, true, 100) - ignored
readsSinkHDFSTest[4](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, false, false, 100) - ignored
readsSinkHDFSTest[5](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/expected.HiSeq.1mb.1RG.2k_lines.alternate.recalibrated.DIQ.bam, ReadsSparkSinkUnitTest2, null, .bam, true, true, 100) - ignored
readsSinkHDFSTest[6](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/CEUTrio.HiSeq.WGS.b37.ch20.1m-1m1k.NA12878.bam, ReadsSparkSinkUnitTest3, null, .bam, true, true, 100) - ignored
readsSinkHDFSTest[7](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/NA12878.chr17_69k_70k.dictFix.cram, ReadsSparkSinkUnitTest5, /gatkCloneMountPoint/src/test/resources/human_g1k_v37.chr17_1Mb.fasta, .cram, true, true, 100) - ignored
readsSinkHDFSTest[8](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest6, null, .sam, true, true, 100) - ignored
readsSinkShardedTest[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, true, 100) - ignored
readsSinkShardedTest[1](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, true, 1) - ignored
readsSinkShardedTest[2](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, false, 100) - ignored
readsSinkShardedTest[3](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, false, true, 100) - ignored
readsSinkShardedTest[4](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, false, false, 100) - ignored
readsSinkShardedTest[5](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/expected.HiSeq.1mb.1RG.2k_lines.alternate.recalibrated.DIQ.bam, ReadsSparkSinkUnitTest2, null, .bam, true, true, 100) - ignored
readsSinkShardedTest[6](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/CEUTrio.HiSeq.WGS.b37.ch20.1m-1m1k.NA12878.bam, ReadsSparkSinkUnitTest3, null, .bam, true, true, 100) - ignored
readsSinkShardedTest[7](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/NA12878.chr17_69k_70k.dictFix.cram, ReadsSparkSinkUnitTest5, /gatkCloneMountPoint/src/test/resources/human_g1k_v37.chr17_1Mb.fasta, .cram, true, true, 100) - ignored
readsSinkShardedTest[8](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest6, null, .sam, true, true, 100) - ignored
readsSinkTest[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, true, 100) - ignored
readsSinkTest[1](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, true, 1) - ignored
readsSinkTest[2](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, false, 100) - ignored
readsSinkTest[3](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, false, true, 100) - ignored
readsSinkTest[4](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, false, false, 100) - ignored
readsSinkTest[5](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/expected.HiSeq.1mb.1RG.2k_lines.alternate.recalibrated.DIQ.bam, ReadsSparkSinkUnitTest2, null, .bam, true, true, 100) - ignored
readsSinkTest[6](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/CEUTrio.HiSeq.WGS.b37.ch20.1m-1m1k.NA12878.bam, ReadsSparkSinkUnitTest3, null, .bam, true, true, 100) - ignored
readsSinkTest[7](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/NA12878.chr17_69k_70k.dictFix.cram, ReadsSparkSinkUnitTest5, /gatkCloneMountPoint/src/test/resources/human_g1k_v37.chr17_1Mb.fasta, .cram, true, true, 100) - ignored
readsSinkTest[8](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest6, null, .sam, true, true, 100) - ignored
testReadsSparkSinkNotSortingReadsToHeader - ignored
testSpecifyPartsDir[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, true, 100) - ignored
testSpecifyPartsDir[1](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, true, 1) - ignored
testSpecifyPartsDir[2](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, false, 100) - ignored
testSpecifyPartsDir[3](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, false, true, 100) - ignored
testSpecifyPartsDir[4](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, false, false, 100) - ignored
testSpecifyPartsDir[5](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/expected.HiSeq.1mb.1RG.2k_lines.alternate.recalibrated.DIQ.bam, ReadsSparkSinkUnitTest2, null, .bam, true, true, 100) - ignored
testSpecifyPartsDir[6](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/CEUTrio.HiSeq.WGS.b37.ch20.1m-1m1k.NA12878.bam, ReadsSparkSinkUnitTest3, null, .bam, true, true, 100) - ignored
testSpecifyPartsDir[7](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/NA12878.chr17_69k_70k.dictFix.cram, ReadsSparkSinkUnitTest5, /gatkCloneMountPoint/src/test/resources/human_g1k_v37.chr17_1Mb.fasta, .cram, true, true, 100) - ignored
testSpecifyPartsDir[8](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest6, null, .sam, true, true, 100) - ignored
testWritingToAnExistingFileHDFS[0](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, true, 100) - ignored
testWritingToAnExistingFileHDFS[1](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, true, 1) - ignored
testWritingToAnExistingFileHDFS[2](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, true, false, 100) - ignored
testWritingToAnExistingFileHDFS[3](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, false, true, 100) - ignored
testWritingToAnExistingFileHDFS[4](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest1, null, .bam, false, false, 100) - ignored
testWritingToAnExistingFileHDFS[5](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/expected.HiSeq.1mb.1RG.2k_lines.alternate.recalibrated.DIQ.bam, ReadsSparkSinkUnitTest2, null, .bam, true, true, 100) - ignored
testWritingToAnExistingFileHDFS[6](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/CEUTrio.HiSeq.WGS.b37.ch20.1m-1m1k.NA12878.bam, ReadsSparkSinkUnitTest3, null, .bam, true, true, 100) - ignored
testWritingToAnExistingFileHDFS[7](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/NA12878.chr17_69k_70k.dictFix.cram, ReadsSparkSinkUnitTest5, /gatkCloneMountPoint/src/test/resources/human_g1k_v37.chr17_1Mb.fasta, .cram, true, true, 100) - ignored
testWritingToAnExistingFileHDFS[8](/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/BQSR/HiSeq.1mb.1RG.2k_lines.bam, ReadsSparkSinkUnitTest6, null, .sam, true, true, 100) - ignored
testWritingToFileURL - ignored

Standard error

15:09:21.239 INFO  BlockManagerInfo - Removed broadcast_11_piece0 on localhost:41569 in memory (size: 2.4 KiB, free: 1920.0 MiB)