Class org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSourceUnitTest

all > org.broadinstitute.hellbender.engine.spark.datasources > ReferenceTwoBitSparkSourceUnitTest
16

tests
0

failures
0

ignored
0.007s

duration
100%

successful

Tests

Test Duration Result
testIntervalConversion[0](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceFileSparkSource@ca698e0, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@7403cc2a, 20:2-10) 0.002s passed
testIntervalConversion[1](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceFileSparkSource@ca698e0, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@7403cc2a, 20:4-5) 0.001s passed
testIntervalConversion[2](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceFileSparkSource@ca698e0, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@7403cc2a, 20:4,000-5,000) 0.001s passed
testIntervalConversion[3](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceFileSparkSource@ca698e0, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@7403cc2a, 20:4,0,0,0-5,0,0,0) 0.001s passed
testIsTwoBit[0](/gatkCloneMountPoint/src/test/resources/large/human_g1k_v37.20.21.2bit, true) 0s passed
testIsTwoBit[1](file:///gatkCloneMountPoint/src/test/resources/large/human_g1k_v37.20.21.2bit, true) 0s passed
testIsTwoBit[2](/gatkCloneMountPoint/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, false) 0s passed
testIsTwoBit[3](file:///gatkCloneMountPoint/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, false) 0.001s passed
testIsTwoBit[4](gs://hellbender/test/resources/large/human_g1k_v37.20.21.2bit, true) 0s passed
testIsTwoBit[5](gs://hellbender/test/resources/large/human_g1k_v37.20.21.fasta, false) 0s passed
testIsTwoBit[6](gs://hellbender/test/resources/large/human_g1k_v37.20.21.2bit?query=param, true) 0s passed
testIsTwoBit[7](gs://hellbender/test/resources/large/human_g1k_v37.20.21.fasta?query=param, false) 0s passed
testQueryPastContigEnd[0](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@5597d6a6, 20:63025420-63025521, 101, 63025520) 0.001s passed
testQueryPastContigEnd[1](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@5597d6a6, 20:63025420-63025620, 101, 63025520) 0s passed
testQueryPastContigEnd[2](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@5597d6a6, 20:63025519-63025521, 2, 63025520) 0s passed
testQueryPastContigEnd[3](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@5597d6a6, 20:63025520-63025521, 1, 63025520) 0s passed

Standard error

15:09:24.944 INFO  BlockManagerInfo - Removed broadcast_99_piece0 on localhost:41569 in memory (size: 152.8 KiB, free: 1919.7 MiB)
15:09:24.945 INFO  BlockManagerInfo - Removed broadcast_95_piece0 on localhost:41569 in memory (size: 50.0 KiB, free: 1919.7 MiB)
15:09:24.946 INFO  BlockManagerInfo - Removed broadcast_97_piece0 on localhost:41569 in memory (size: 229.0 B, free: 1919.7 MiB)
15:09:24.947 INFO  BlockManagerInfo - Removed broadcast_101_piece0 on localhost:41569 in memory (size: 50.1 KiB, free: 1919.8 MiB)
15:09:24.947 INFO  BlockManagerInfo - Removed broadcast_100_piece0 on localhost:41569 in memory (size: 50.1 KiB, free: 1919.8 MiB)
15:09:24.948 INFO  BlockManagerInfo - Removed broadcast_98_piece0 on localhost:41569 in memory (size: 50.1 KiB, free: 1919.9 MiB)
15:09:24.949 INFO  BlockManagerInfo - Removed broadcast_94_piece0 on localhost:41569 in memory (size: 239.0 B, free: 1919.9 MiB)
15:09:24.949 INFO  BlockManagerInfo - Removed broadcast_96_piece0 on localhost:41569 in memory (size: 152.8 KiB, free: 1920.0 MiB)