Class org.broadinstitute.hellbender.tools.copynumber.models.AlleleFractionModellerUnitTest

all > org.broadinstitute.hellbender.tools.copynumber.models > AlleleFractionModellerUnitTest
1

tests
0

failures
0

ignored
4.956s

duration
100%

successful

Tests

Test Duration Result
testMCMC 4.956s passed

Standard error

15:09:26.411 INFO  AlleleFractionInitializer - Initializing allele-fraction model, iterating until log likelihood converges to within 0.500000...
15:09:26.448 INFO  AlleleFractionInitializer - Iteration 1, model log likelihood = -62666.394911...
15:09:26.448 INFO  AlleleFractionInitializer - AlleleFractionGlobalParameters{meanBias=1.193680, biasVariance=0.028378, outlierProbability=0.017314}
15:09:26.488 INFO  AlleleFractionInitializer - Iteration 2, model log likelihood = -62665.700572...
15:09:26.488 INFO  AlleleFractionInitializer - AlleleFractionGlobalParameters{meanBias=1.188111, biasVariance=0.032104, outlierProbability=0.021875}
15:09:26.524 INFO  AlleleFractionInitializer - Iteration 3, model log likelihood = -62665.686368...
15:09:26.524 INFO  AlleleFractionInitializer - AlleleFractionGlobalParameters{meanBias=1.190299, biasVariance=0.030041, outlierProbability=0.020853}
15:09:26.540 INFO  GibbsSampler - Starting MCMC sampling.
15:09:27.487 INFO  GibbsSampler - 25 of 150 samples generated.
15:09:28.260 INFO  GibbsSampler - 50 of 150 samples generated.
15:09:29.016 INFO  GibbsSampler - 75 of 150 samples generated.
15:09:29.782 INFO  GibbsSampler - 100 of 150 samples generated.
15:09:30.578 INFO  GibbsSampler - 125 of 150 samples generated.
15:09:31.341 INFO  GibbsSampler - 150 of 150 samples generated.
15:09:31.341 INFO  GibbsSampler - MCMC sampling complete.