| Test |
Duration |
Result |
| testGetFieldFail[0](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, TESTFIELD_OMICRON) |
0s |
passed |
| testGetFieldFail[1](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, hugoSymmbol) |
0s |
passed |
| testGetFieldFail[2](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, GENCODE_hugoSymbol) |
0s |
passed |
| testGetFieldNames[0](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@437dcfaa, [Gencode_TEST_VERSION_hugoSymbol, Gencode_TEST_VERSION_ncbiBuild, Gencode_TEST_VERSION_chromosome, Gencode_TEST_VERSION_start, Gencode_TEST_VERSION_end, Gencode_TEST_VERSION_variantClassification, Gencode_TEST_VERSION_secondaryVariantClassification, Gencode_TEST_VERSION_variantType, Gencode_TEST_VERSION_refAllele, Gencode_TEST_VERSION_tumorSeqAllele1, Gencode_TEST_VERSION_tumorSeqAllele2, Gencode_TEST_VERSION_genomeChange, Gencode_TEST_VERSION_annotationTranscript, Gencode_TEST_VERSION_transcriptStrand, Gencode_TEST_VERSION_transcriptExon, Gencode_TEST_VERSION_transcriptPos, Gencode_TEST_VERSION_cDnaChange, Gencode_TEST_VERSION_codonChange, Gencode_TEST_VERSION_proteinChange, Gencode_TEST_VERSION_gcContent, Gencode_TEST_VERSION_referenceContext, Gencode_TEST_VERSION_otherTranscripts]) |
0s |
passed |
| testGetField[0](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, Gencode_TEST_VERSION_hugoSymbol, TESTGENE) |
0s |
passed |
| testGetField[10](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@37a982d4, end, OVERRIDE) |
0s |
passed |
| testGetField[11](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, variantClassification, NONSENSE) |
0s |
passed |
| testGetField[12](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@250dd7bc, variantClassification, OVERRIDE) |
0s |
passed |
| testGetField[13](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, secondaryVariantClassification, INTRON) |
0s |
passed |
| testGetField[14](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@b0d745d4, secondaryVariantClassification, OVERRIDE) |
0s |
passed |
| testGetField[15](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, variantType, SNP) |
0s |
passed |
| testGetField[16](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@bd9bb4bc, variantType, OVERRIDE) |
0s |
passed |
| testGetField[17](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, refAllele, A) |
0s |
passed |
| testGetField[18](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@1099c8d4, refAllele, OVERRIDE) |
0s |
passed |
| testGetField[19](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, tumorSeqAllele1, A) |
0s |
passed |
| testGetField[1](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, hugoSymbol, TESTGENE) |
0s |
passed |
| testGetField[20](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e9fcd1bc, tumorSeqAllele1, OVERRIDE) |
0s |
passed |
| testGetField[21](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, tumorSeqAllele2, T) |
0s |
passed |
| testGetField[22](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@75210bd4, tumorSeqAllele2, OVERRIDE) |
0s |
passed |
| testGetField[23](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, genomeChange, big_%20_changes) |
0s |
passed |
| testGetField[24](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@6012ebc, genomeChange, OVERRIDE) |
0s |
passed |
| testGetField[25](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, annotationTranscript, T1) |
0s |
passed |
| testGetField[26](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c89d0ed4, annotationTranscript, OVERRIDE) |
0s |
passed |
| testGetField[27](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, transcriptStrand, 3') |
0s |
passed |
| testGetField[28](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@2178cbbc, transcriptStrand, OVERRIDE) |
0s |
passed |
| testGetField[29](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, transcriptExon, 1) |
0s |
passed |
| testGetField[2](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@49b1b20f, hugoSymbol, GARBAGEDAY) |
0s |
passed |
| testGetField[30](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c13dd1d4, transcriptExon, OVERRIDE) |
0.001s |
passed |
| testGetField[31](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, transcriptPos, 1) |
0s |
passed |
| testGetField[32](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@33a8bc, transcriptPos, OVERRIDE) |
0s |
passed |
| testGetField[33](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, cDnaChange, A) |
0s |
passed |
| testGetField[34](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e13354d4, cDnaChange, OVERRIDE) |
0s |
passed |
| testGetField[35](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, codonChange, ATC) |
0s |
passed |
| testGetField[36](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@1a01c5bc, codonChange, OVERRIDE) |
0s |
passed |
| testGetField[37](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, proteinChange, Lys) |
0s |
passed |
| testGetField[38](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@76ad97d4, proteinChange, OVERRIDE) |
0s |
passed |
| testGetField[39](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, gcContent, 1.0) |
0s |
passed |
| testGetField[3](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, ncbiBuild, BUILD1) |
0s |
passed |
| testGetField[40](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ab322bc, gcContent, OVERRIDE) |
0s |
passed |
| testGetField[41](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, referenceContext, ATGCGCAT) |
0s |
passed |
| testGetField[42](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9bdc9ad4, referenceContext, OVERRIDE) |
0s |
passed |
| testGetField[43](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, otherTranscripts, ONE/TWO/THREE) |
0.001s |
passed |
| testGetField[44](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@6217bfbc, otherTranscripts, OVERRIDE) |
0s |
passed |
| testGetField[4](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c42bddbc, ncbiBuild, OVERRIDE) |
0.001s |
passed |
| testGetField[5](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, chromosome, chr1) |
0s |
passed |
| testGetField[6](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@52e07fd4, chromosome, OVERRIDE) |
0s |
passed |
| testGetField[7](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, start, 1) |
0s |
passed |
| testGetField[8](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@78833abc, start, OVERRIDE) |
0s |
passed |
| testGetField[9](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@e8b35208, end, 100) |
0s |
passed |
| testVariantClassificationSeverityOverride |
0s |
passed |