Class org.broadinstitute.hellbender.utils.IndexUtilsUnitTest

all > org.broadinstitute.hellbender.utils > IndexUtilsUnitTest
15

tests
0

failures
0

ignored
1.069s

duration
100%

successful

Tests

Test Duration Result
testCheckIndexModificationTime 0.024s passed
testCreateSequenceDictionaryFromTabixIndex 0.027s passed
testCreateSequenceDictionaryFromTribbleIndex 0.002s passed
testFailLoadTabixIndex[0](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf) 0s passed
testFailLoadTabixIndex[1](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.g.vcf) 0.001s passed
testFailLoadTabixIndex[2](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_bed_for_index.bed) 0s passed
testFailLoadTribbleIndex[0](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf.bgz) 0.001s passed
testIsSequenceDictionaryFromIndexNegative 0s passed
testIsSequenceDictionaryFromIndexPositive 0.001s passed
testLoadIndexAcceptOldIndex 1.006s passed
testLoadIndex[0](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf) 0.001s passed
testLoadIndex[1](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.g.vcf) 0.004s passed
testLoadIndex[2](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_bed_for_index.bed) 0.001s passed
testLoadIndex_noIndex 0s passed
testLoadTabixIndex[0](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf.bgz) 0.001s passed

Standard error

15:17:53.913 WARN  IndexUtils - Feature file "file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf.bgz" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
15:17:53.938 WARN  IndexUtils - Feature file "file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
15:17:53.944 WARN  IndexUtils - Feature file "file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
15:17:54.957 WARN  IndexUtils - Index file /tmp/testLoadIndexAcceptOldIndex17045859820045805531/test_variants_for_index.newerThanIndex.vcf.idx is out of date (index older than input file). Use IndexFeatureFile to make a new index.