Class org.broadinstitute.hellbender.utils.samples.SampleDBUnitTest

all > org.broadinstitute.hellbender.utils.samples > SampleDBUnitTest
14

tests
0

failures
0

ignored
0.003s

duration
100%

successful

Tests

Test Duration Result
getFamilies 0s passed
getFamily 0s passed
getFamilyIDs 0s passed
loadAndMergeConsistentData 0s passed
loadDuplicateData 0s passed
loadFamilyIDs 0s passed
loadInconsistentData 0s passed
loadNonExistentFile 0.001s passed
loadPEDFile 0s passed
loadPEDString 0.001s passed
testAddSamplesFromSampleNames 0s passed
testGetFounderIds 0.001s passed
testGetTrios 0s passed
testGetTriosMultipleKids 0s passed

Standard error

15:21:40.637 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
15:21:40.638 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
15:21:40.638 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
15:21:40.639 WARN  PedReader - Reading PED string: "fam1 kid dad   mom   1 2" with missing fields: []
15:21:40.639 WARN  PedReader - Reading PED string: "fam1 kid dad   mom   1 2" with missing fields: []
15:21:40.640 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
15:21:40.641 WARN  PedReader - Reading PED string: "fam1 kid 0   0   2 2" with missing fields: []
15:21:40.642 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2" with missing fields: []
15:21:40.643 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam4 kid4 dad4 0 1 2
fam4 dad4 0   0   1 1
fam5 kid2 dad2 mom2 1 2
fam5 kid3 dad2 mom2 1 2
fam5 dad2 0   0   1 1
fam5 mom2 0   0   2 2" with missing fields: []
15:21:40.644 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
15:21:40.645 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam4 kid4 dad4 0 1 2
fam4 dad4 0   0   1 1
fam5 kid2 dad2 mom2 1 2
fam5 kid3 dad2 mom2 1 2
fam5 dad2 0   0   1 1
fam5 mom2 0   0   2 2" with missing fields: []