Class org.broadinstitute.hellbender.utils.spark.SparkUtilsUnitTest

20

tests

0

failures

1

ignored

4.121s

duration

100%

successful

Tests

Test Duration Result
testConvertHeaderlessHadoopBamShardToBam 0.005s passed
testInvalidSort 1.278s passed
testPathExists - ignored
testPutReadsWithSameNameInSamePartition[0](1, 1, 2, [I@48266b36) 0.628s passed
testPutReadsWithSameNameInSamePartition[10](20, 7, 5, [I@60c26a24) 0.063s passed
testPutReadsWithSameNameInSamePartition[1](2, 2, 2, [I@6976d1b4) 0.069s passed
testPutReadsWithSameNameInSamePartition[2](3, 2, 2, [I@41348314) 0.061s passed
testPutReadsWithSameNameInSamePartition[3](3, 3, 2, [I@2ddf5b00) 0.062s passed
testPutReadsWithSameNameInSamePartition[4](6, 2, 2, [I@7b67e621) 0.049s passed
testPutReadsWithSameNameInSamePartition[5](6, 3, 2, [I@4a1ad0ac) 0.053s passed
testPutReadsWithSameNameInSamePartition[6](6, 4, 2, [I@28cb2b7d) 0.054s passed
testPutReadsWithSameNameInSamePartition[7](2, 2, 3, [I@3e0b761c) 0.043s passed
testPutReadsWithSameNameInSamePartition[8](3, 2, 10, [I@568e6121) 0.044s passed
testPutReadsWithSameNameInSamePartition[9](6, 4, 3, [I@367c5816) 0.046s passed
testReadsMustBeQueryGroupedToFixPartitions 0.002s passed
testReadsPairsSpanningMultiplePartitions 0.308s passed
testSortCoordinateSortMatchesHtsjdk 0.445s passed
testSortQuerynameFixesPartitionBoundaries 0.255s passed
testSortQuerynameSortMatchesHtsjdk 0.577s passed
testSortUsingElementsAsKeys 0.079s passed

Standard error

15:21:40.680 WARN  SparkContextFactory - Environment variables HELLBENDER_TEST_PROJECT and HELLBENDER_JSON_SERVICE_ACCOUNT_KEY must be set or the GCS hadoop connector will not be configured properly
15:21:41.077 WARN  NativeCodeLoader - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable