Class org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest

all > org.broadinstitute.hellbender.engine > LocusWalkerByIntervalUnitTest
tests
failures
ignored
0.207s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testOverlappingBasesCoverageInformation[0]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@5b1295c0, [I@bf3aa52)	0.033s	passed
testOverlappingBasesCoverageInformation[10]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@15aa3084, [I@4e6c4c55)	0.013s	passed
testOverlappingBasesCoverageInformation[11]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@d67f6f, [I@4fc28b23)	0.016s	passed
testOverlappingBasesCoverageInformation[12]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@2fd79ac6, [I@1215982f)	0.016s	passed
testOverlappingBasesCoverageInformation[1]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@661ec798, [I@2c7fff1b)	0.014s	passed
testOverlappingBasesCoverageInformation[2]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@2d4e6bb2, [I@13453610)	0.013s	passed
testOverlappingBasesCoverageInformation[3]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@4eef2522, [I@c62d08a)	0.013s	passed
testOverlappingBasesCoverageInformation[4]([20:1000-2000, 20:2001-3000], [Lhtsjdk.samtools.util.Locatable;@30e29c0c, [I@1dc9aba0)	0.012s	passed
testOverlappingBasesCoverageInformation[5]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@74ed11d7, [I@29794ef5)	0.013s	passed
testOverlappingBasesCoverageInformation[6]([20:1000-2000, 21:3001-4000], [Lhtsjdk.samtools.util.Locatable;@265d72fd, [I@37ccedbe)	0.013s	passed
testOverlappingBasesCoverageInformation[7]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@50a1c2f3, [I@453ca7f)	0.026s	passed
testOverlappingBasesCoverageInformation[8]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@746cb25d, [I@4b9187de)	0.015s	passed
testOverlappingBasesCoverageInformation[9]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@10e542f3, [I@6cde3dac)	0.010s	passed
Standard error

14:51:04.656 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.656 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.656 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.656 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.656 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.656 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.656 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.656 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.657 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.657 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.657 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.657 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.657 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.657 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.657 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.657 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.657 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.664 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
14:51:04.664 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.664 INFO  ProgressMeter - Starting traversal
14:51:04.664 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.681 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.681 INFO  ProgressMeter -              20:1999              0.0                  1001        3532941.2
14:51:04.682 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
14:51:04.682 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.688 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.689 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.689 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.689 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.689 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.689 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.689 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.689 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.689 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.689 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.689 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.689 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.690 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.690 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.690 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.690 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.690 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.692 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
14:51:04.692 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.692 INFO  ProgressMeter - Starting traversal
14:51:04.692 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.696 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.696 INFO  ProgressMeter -              20:1999              0.0                  1001       15015000.0
14:51:04.696 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
14:51:04.696 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.704 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.705 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.705 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.705 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.705 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.705 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.705 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.705 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.705 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.705 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.705 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.705 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.705 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.705 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.705 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.705 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.705 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.707 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
14:51:04.707 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.707 INFO  ProgressMeter - Starting traversal
14:51:04.707 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.710 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.710 INFO  ProgressMeter -              20:1999              0.0                  1001       20020000.0
14:51:04.710 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
14:51:04.710 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.718 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.718 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.719 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.719 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.719 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.719 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.719 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.719 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.719 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.719 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.719 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.719 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.719 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.719 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.719 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.719 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.719 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.721 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
14:51:04.721 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.721 INFO  ProgressMeter - Starting traversal
14:51:04.721 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.724 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.724 INFO  ProgressMeter -              20:1999              0.0                  1001       20020000.0
14:51:04.724 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
14:51:04.724 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.730 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.730 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.730 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.730 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.730 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.730 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.730 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.730 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.730 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.730 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.730 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.730 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.730 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.730 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.730 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.730 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.730 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.732 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
14:51:04.732 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.732 INFO  ProgressMeter - Starting traversal
14:51:04.732 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.735 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.735 INFO  ProgressMeter -              20:2999              0.0                  2001       40020000.0
14:51:04.736 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
14:51:04.736 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.742 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.742 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.742 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.742 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.742 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.742 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.743 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.743 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.743 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.743 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.743 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.743 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.743 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.743 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.743 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.743 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.743 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.745 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
14:51:04.745 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.745 INFO  ProgressMeter - Starting traversal
14:51:04.745 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.748 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.748 INFO  ProgressMeter -              20:3999              0.0                  2001       40020000.0
14:51:04.748 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
14:51:04.748 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.755 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.755 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.755 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.755 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.755 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.755 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.755 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.755 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.756 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.756 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.756 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.756 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.756 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.756 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.756 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.756 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.756 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.758 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
14:51:04.758 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.758 INFO  ProgressMeter - Starting traversal
14:51:04.758 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.761 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.761 INFO  ProgressMeter -              21:3999              0.0                  2001       40020000.0
14:51:04.761 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
14:51:04.761 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.768 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.769 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.769 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.769 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.769 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.769 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.769 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.769 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.769 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.769 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.769 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.769 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.769 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.769 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.769 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.769 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.769 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.771 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
14:51:04.771 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.771 INFO  ProgressMeter - Starting traversal
14:51:04.771 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.787 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.788 INFO  ProgressMeter -              20:3999              0.0                  2001        7503750.0
14:51:04.788 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
14:51:04.788 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.797 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.798 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.798 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.798 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.798 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.798 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.798 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.798 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.798 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.798 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.798 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.798 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.798 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.798 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.798 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.798 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.798 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.800 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
14:51:04.800 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.800 INFO  ProgressMeter - Starting traversal
14:51:04.800 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.803 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.803 INFO  ProgressMeter -              20:1999              0.0                  1001       20020000.0
14:51:04.803 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
14:51:04.803 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.810 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.810 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.810 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.810 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.810 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.810 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.810 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.810 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.810 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.810 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.810 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.810 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.810 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.810 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.811 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.811 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.811 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.812 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
14:51:04.812 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.812 INFO  ProgressMeter - Starting traversal
14:51:04.812 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.814 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.814 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
14:51:04.814 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
14:51:04.814 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.820 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.821 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.821 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.821 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.821 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.821 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.821 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.821 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.821 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.821 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.821 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.821 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.821 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.821 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.821 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.821 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.821 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.823 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
14:51:04.823 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.823 INFO  ProgressMeter - Starting traversal
14:51:04.823 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.827 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.827 INFO  ProgressMeter -              20:1999              0.0                  1001       15015000.0
14:51:04.827 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
14:51:04.828 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.837 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.837 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.837 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.837 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.837 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.837 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.837 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.837 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.838 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.838 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.838 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.838 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.838 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.838 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.838 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.838 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.838 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.840 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
14:51:04.840 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.840 INFO  ProgressMeter - Starting traversal
14:51:04.840 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.843 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.843 INFO  ProgressMeter -              20:1999              0.0                  1001       20020000.0
14:51:04.843 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
14:51:04.844 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.853 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.853 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.853 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.853 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.853 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.853 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.853 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.853 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.854 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.854 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.854 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.854 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.854 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.854 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.854 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.854 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.854 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.856 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
14:51:04.856 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.856 INFO  ProgressMeter - Starting traversal
14:51:04.856 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.859 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
14:51:04.859 INFO  ProgressMeter -              20:1999              0.0                  1001       20020000.0
14:51:04.859 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
14:51:04.859 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600