Class org.broadinstitute.hellbender.engine.LocusWalkerUnitTest

2

tests

0

failures

0

ignored

0.038s

duration

100%

successful

Tests

Test Duration Result
testEmitUncoveredLoci 0.020s passed
testTransformReads 0.018s passed

Standard error

14:51:04.870 INFO  TestEmitUncoveredLociTool - ------------------------------------------------------------
14:51:04.870 INFO  TestEmitUncoveredLociTool - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.870 INFO  TestEmitUncoveredLociTool - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.871 INFO  TestEmitUncoveredLociTool - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.871 INFO  TestEmitUncoveredLociTool - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.871 INFO  TestEmitUncoveredLociTool - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.871 INFO  TestEmitUncoveredLociTool - ------------------------------------------------------------
14:51:04.871 INFO  TestEmitUncoveredLociTool - ------------------------------------------------------------
14:51:04.871 INFO  TestEmitUncoveredLociTool - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.871 INFO  TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.871 INFO  TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.872 INFO  TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.872 INFO  TestEmitUncoveredLociTool - Deflater: IntelDeflater
14:51:04.872 INFO  TestEmitUncoveredLociTool - Inflater: IntelInflater
14:51:04.872 INFO  TestEmitUncoveredLociTool - GCS max retries/reopens: 20
14:51:04.872 INFO  TestEmitUncoveredLociTool - Requester pays: disabled
14:51:04.872 INFO  TestEmitUncoveredLociTool - Initializing engine
14:51:04.877 INFO  IntervalArgumentCollection - Processing 10 bp from intervals
14:51:04.877 INFO  TestEmitUncoveredLociTool - Done initializing engine
14:51:04.877 INFO  ProgressMeter - Starting traversal
14:51:04.877 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.880 INFO  TestEmitUncoveredLociTool - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 5 reads processed
14:51:04.881 INFO  ProgressMeter -             unmapped              0.0                    10         150000.0
14:51:04.881 INFO  ProgressMeter - Traversal complete. Processed 10 total loci in 0.0 minutes.
14:51:04.881 INFO  TestEmitUncoveredLociTool - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerUnitTest$TestEmitUncoveredLociTool done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
14:51:04.891 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.891 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
14:51:04.891 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:51:04.891 INFO  TestTransformedLocusWalker - Executing as runner@runnervmnay03 on Linux v6.14.0-1017-azure amd64
14:51:04.891 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
14:51:04.891 INFO  TestTransformedLocusWalker - Start Date/Time: March 4, 2026 at 2:51:04 PM UTC
14:51:04.891 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.891 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
14:51:04.892 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:51:04.892 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:51:04.892 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:51:04.892 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:51:04.892 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
14:51:04.892 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
14:51:04.892 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
14:51:04.892 INFO  TestTransformedLocusWalker - Requester pays: disabled
14:51:04.892 INFO  TestTransformedLocusWalker - Initializing engine
14:51:04.896 INFO  IntervalArgumentCollection - Processing 1 bp from intervals
14:51:04.896 INFO  TestTransformedLocusWalker - Done initializing engine
14:51:04.897 INFO  ProgressMeter - Starting traversal
14:51:04.897 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
14:51:04.899 INFO  TestTransformedLocusWalker - 0 read(s) filtered by:  

14:51:04.899 INFO  ProgressMeter -             unmapped              0.0                     1          30000.0
14:51:04.899 INFO  ProgressMeter - Traversal complete. Processed 1 total loci in 0.0 minutes.
14:51:04.899 INFO  TestTransformedLocusWalker - Shutting down engine
[March 4, 2026 at 2:51:04 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600