Class org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeffUnitTest

all > org.broadinstitute.hellbender.tools.walkers.annotator > InbreedingCoeffUnitTest

tests

failures

ignored

2.414s

duration

100%

successful

Tests
Standard error

Tests

Test	Duration	Result
compareOldWithReblocked	0.003s	passed
testAllHetsForLargeCohorts	1.230s	passed
testEmptyIfNoGenotypes	0.001s	passed
testInbreedingCoeffForMultiallelicVC	0.001s	passed
testInbreedingCoeffForMultiallelicVC_AS	0.005s	passed
testInbreedingCoeffForMultiallelicVC_refAltFlip	0s	passed
testInbreedingCoeffForMultiallelicVC_usingFounders	0.001s	passed
testInbreedingCoeffForMultiallelicVC_usingPedigreeFile	0.001s	passed
testLabels	0s	passed
testLabels_AS	0s	passed
testLargeCohorts	1.162s	passed
testRoundingIsntAppliedToEachGenotype	0.001s	passed
testSingletonVsCommonAllele	0.004s	passed
testSingletonVsCommonAllele_refAltFlip	0.005s	passed
testTinyCohorts_AS	0s	passed

Standard error

15:00:13.795 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
15:00:13.795 DEBUG GenomeLocParser -  1 (16000 bp)
15:00:13.795 DEBUG GenomeLocParser -  2 (16000 bp)
15:00:13.795 DEBUG GenomeLocParser -  3 (16000 bp)
15:00:13.795 DEBUG GenomeLocParser -  4 (16000 bp)
15:00:15.030 WARN  InbreedingCoeff - InbreedingCoeff will not be calculated at position null:0 and possibly subsequent; at least 10 samples must have called genotypes
15:00:15.037 INFO  PedReader - Phenotype is other? false