Class org.broadinstitute.hellbender.utils.IndexUtilsUnitTest

all > org.broadinstitute.hellbender.utils > IndexUtilsUnitTest
15

tests
0

failures
0

ignored
1.058s

duration
100%

successful

Tests

Test Duration Result
testCheckIndexModificationTime 0.019s passed
testCreateSequenceDictionaryFromTabixIndex 0.025s passed
testCreateSequenceDictionaryFromTribbleIndex 0.002s passed
testFailLoadTabixIndex[0](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf) 0s passed
testFailLoadTabixIndex[1](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.g.vcf) 0.001s passed
testFailLoadTabixIndex[2](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_bed_for_index.bed) 0.001s passed
testFailLoadTribbleIndex[0](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf.bgz) 0.001s passed
testIsSequenceDictionaryFromIndexNegative 0.001s passed
testIsSequenceDictionaryFromIndexPositive 0.001s passed
testLoadIndexAcceptOldIndex 1.005s passed
testLoadIndex[0](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf) 0s passed
testLoadIndex[1](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.g.vcf) 0s passed
testLoadIndex[2](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_bed_for_index.bed) 0s passed
testLoadIndex_noIndex 0s passed
testLoadTabixIndex[0](src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf.bgz) 0.002s passed

Standard error

15:00:53.537 WARN  IndexUtils - Feature file "file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf.bgz" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
15:00:53.560 WARN  IndexUtils - Feature file "file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
15:00:53.566 WARN  IndexUtils - Feature file "file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/utils/IndexUtils/test_variants_for_index.vcf" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
15:00:54.576 WARN  IndexUtils - Index file /tmp/testLoadIndexAcceptOldIndex14011908551850942295/test_variants_for_index.newerThanIndex.vcf.idx is out of date (index older than input file). Use IndexFeatureFile to make a new index.