Class org.broadinstitute.hellbender.utils.fasta.CachingIndexedFastaSequenceFileUnitTest

40

tests

0

failures

0

ignored

18.796s

duration

100%

successful

Tests

Test Duration Result
testCachingIndexedFastaReaderSequential1[0](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 1) 0.191s passed
testCachingIndexedFastaReaderSequential1[10](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 10) 0.147s passed
testCachingIndexedFastaReaderSequential1[11](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 100) 0.129s passed
testCachingIndexedFastaReaderSequential1[12](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 1) 0.216s passed
testCachingIndexedFastaReaderSequential1[13](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 10) 0.226s passed
testCachingIndexedFastaReaderSequential1[14](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 100) 9.785s passed
testCachingIndexedFastaReaderSequential1[15](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.128s passed
testCachingIndexedFastaReaderSequential1[16](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.128s passed
testCachingIndexedFastaReaderSequential1[17](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.139s passed
testCachingIndexedFastaReaderSequential1[1](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 10) 0.128s passed
testCachingIndexedFastaReaderSequential1[2](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 100) 0.129s passed
testCachingIndexedFastaReaderSequential1[3](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 1) 0.129s passed
testCachingIndexedFastaReaderSequential1[4](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 10) 0.120s passed
testCachingIndexedFastaReaderSequential1[5](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 100) 0.251s passed
testCachingIndexedFastaReaderSequential1[6](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.120s passed
testCachingIndexedFastaReaderSequential1[7](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.122s passed
testCachingIndexedFastaReaderSequential1[8](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.130s passed
testCachingIndexedFastaReaderSequential1[9](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 1) 0.169s passed
testCachingIndexedFastaReaderTwoStage[0](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 1) 0.019s passed
testCachingIndexedFastaReaderTwoStage[10](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 10) 0.015s passed
testCachingIndexedFastaReaderTwoStage[11](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 100) 0.016s passed
testCachingIndexedFastaReaderTwoStage[12](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 1) 0.980s passed
testCachingIndexedFastaReaderTwoStage[13](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 10) 0.994s passed
testCachingIndexedFastaReaderTwoStage[14](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 100) 0.964s passed
testCachingIndexedFastaReaderTwoStage[15](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 1) 1.042s passed
testCachingIndexedFastaReaderTwoStage[16](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 10) 1.029s passed
testCachingIndexedFastaReaderTwoStage[17](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 100) 1.006s passed
testCachingIndexedFastaReaderTwoStage[1](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 10) 0.019s passed
testCachingIndexedFastaReaderTwoStage[2](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 100) 0.018s passed
testCachingIndexedFastaReaderTwoStage[3](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 1) 0.044s passed
testCachingIndexedFastaReaderTwoStage[4](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 10) 0.044s passed
testCachingIndexedFastaReaderTwoStage[5](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 100, 100) 0.044s passed
testCachingIndexedFastaReaderTwoStage[6](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 1) 0.050s passed
testCachingIndexedFastaReaderTwoStage[7](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 10) 0.050s passed
testCachingIndexedFastaReaderTwoStage[8](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, 1000, 100) 0.050s passed
testCachingIndexedFastaReaderTwoStage[9](/home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta.gz, /home/runner/work/gatk/gatk/src/test/resources/exampleFASTA.fasta, -1, 1) 0.015s passed
testFailOnBadBase 0.003s passed
testIupacChanges 0.002s passed
testMixedCasesInExample 0.004s passed
testNonexistentReference 0.001s passed