Class org.broadinstitute.hellbender.utils.samples.PedReaderUnitTest

all > org.broadinstitute.hellbender.utils.samples > PedReaderUnitTest
92

tests
0

failures
0

ignored
0.024s

duration
100%

successful

Tests

Test Duration Result
testPedReaderTagParsing1 0s passed
testPedReaderTagParsing2 0s passed
testPedReaderTagParsing[0](TestDataProvider()) 0s passed
testPedReaderTagParsing[1](TestDataProvider()) 0s passed
testPedReaderTagParsing[2](TestDataProvider()) 0s passed
testPedReaderTagParsing[3](TestDataProvider()) 0s passed
testPedReaderTagParsing[4](TestDataProvider()) 0s passed
testPedReaderTagParsing[5](TestDataProvider()) 0s passed
testPedReaderTagParsing[6](TestDataProvider()) 0s passed
testPedReaderWithComments[0](TestDataProvider(singleRecordMale)) 0.001s passed
testPedReaderWithComments[10](TestDataProvider(implicitTrio)) 0s passed
testPedReaderWithComments[11](TestDataProvider(partialTrio)) 0s passed
testPedReaderWithComments[12](TestDataProvider(bigPedigree)) 0s passed
testPedReaderWithComments[13](TestDataProvider(singleRecordMale)) 0s passed
testPedReaderWithComments[14](TestDataProvider(singleRecordFemale)) 0s passed
testPedReaderWithComments[15](TestDataProvider(singleRecordMissingGender)) 0s passed
testPedReaderWithComments[16](TestDataProvider(singleRecordAffected)) 0.001s passed
testPedReaderWithComments[17](TestDataProvider(singleRecordUnaffected)) 0s passed
testPedReaderWithComments[18](TestDataProvider(singleRecordMissingAffection-9)) 0s passed
testPedReaderWithComments[19](TestDataProvider(singleRecordMissingAffection0)) 0s passed
testPedReaderWithComments[1](TestDataProvider(singleRecordFemale)) 0s passed
testPedReaderWithComments[20](TestDataProvider(multipleUnrelated)) 0.001s passed
testPedReaderWithComments[21](TestDataProvider(multipleUnrelatedExtraLine)) 0s passed
testPedReaderWithComments[22](TestDataProvider(explicitTrio)) 0s passed
testPedReaderWithComments[23](TestDataProvider(implicitTrio)) 0s passed
testPedReaderWithComments[24](TestDataProvider(partialTrio)) 0.001s passed
testPedReaderWithComments[25](TestDataProvider(bigPedigree)) 0s passed
testPedReaderWithComments[2](TestDataProvider(singleRecordMissingGender)) 0s passed
testPedReaderWithComments[3](TestDataProvider(singleRecordAffected)) 0s passed
testPedReaderWithComments[4](TestDataProvider(singleRecordUnaffected)) 0.001s passed
testPedReaderWithComments[5](TestDataProvider(singleRecordMissingAffection-9)) 0s passed
testPedReaderWithComments[6](TestDataProvider(singleRecordMissingAffection0)) 0s passed
testPedReaderWithComments[7](TestDataProvider(multipleUnrelated)) 0s passed
testPedReaderWithComments[8](TestDataProvider(multipleUnrelatedExtraLine)) 0.001s passed
testPedReaderWithComments[9](TestDataProvider(explicitTrio)) 0s passed
testPedReaderWithMissing[0](TestDataProvider(missingFam)) 0.001s passed
testPedReaderWithMissing[1](TestDataProvider(missingParents)) 0s passed
testPedReaderWithMissing[2](TestDataProvider(missingSex)) 0s passed
testPedReaderWithMissing[3](TestDataProvider(missingPhenotype)) 0s passed
testPedReaderWithMissing[4](TestDataProvider(missingEverythingButGender)) 0s passed
testPedReaderWithSemicolons[0](TestDataProvider(singleRecordMale)) 0s passed
testPedReaderWithSemicolons[10](TestDataProvider(implicitTrio)) 0.001s passed
testPedReaderWithSemicolons[11](TestDataProvider(partialTrio)) 0s passed
testPedReaderWithSemicolons[12](TestDataProvider(bigPedigree)) 0s passed
testPedReaderWithSemicolons[13](TestDataProvider(singleRecordMale)) 0s passed
testPedReaderWithSemicolons[14](TestDataProvider(singleRecordFemale)) 0.001s passed
testPedReaderWithSemicolons[15](TestDataProvider(singleRecordMissingGender)) 0s passed
testPedReaderWithSemicolons[16](TestDataProvider(singleRecordAffected)) 0s passed
testPedReaderWithSemicolons[17](TestDataProvider(singleRecordUnaffected)) 0.001s passed
testPedReaderWithSemicolons[18](TestDataProvider(singleRecordMissingAffection-9)) 0s passed
testPedReaderWithSemicolons[19](TestDataProvider(singleRecordMissingAffection0)) 0.001s passed
testPedReaderWithSemicolons[1](TestDataProvider(singleRecordFemale)) 0s passed
testPedReaderWithSemicolons[20](TestDataProvider(multipleUnrelated)) 0s passed
testPedReaderWithSemicolons[21](TestDataProvider(multipleUnrelatedExtraLine)) 0s passed
testPedReaderWithSemicolons[22](TestDataProvider(explicitTrio)) 0s passed
testPedReaderWithSemicolons[23](TestDataProvider(implicitTrio)) 0.001s passed
testPedReaderWithSemicolons[24](TestDataProvider(partialTrio)) 0s passed
testPedReaderWithSemicolons[25](TestDataProvider(bigPedigree)) 0s passed
testPedReaderWithSemicolons[26](TestDataProvider(singleRecordMale)) 0.001s passed
testPedReaderWithSemicolons[27](TestDataProvider(singleRecordFemale)) 0s passed
testPedReaderWithSemicolons[28](TestDataProvider(singleRecordMissingGender)) 0s passed
testPedReaderWithSemicolons[29](TestDataProvider(singleRecordAffected)) 0s passed
testPedReaderWithSemicolons[2](TestDataProvider(singleRecordMissingGender)) 0.001s passed
testPedReaderWithSemicolons[30](TestDataProvider(singleRecordUnaffected)) 0.001s passed
testPedReaderWithSemicolons[31](TestDataProvider(singleRecordMissingAffection-9)) 0s passed
testPedReaderWithSemicolons[32](TestDataProvider(singleRecordMissingAffection0)) 0s passed
testPedReaderWithSemicolons[33](TestDataProvider(multipleUnrelated)) 0.001s passed
testPedReaderWithSemicolons[34](TestDataProvider(multipleUnrelatedExtraLine)) 0s passed
testPedReaderWithSemicolons[35](TestDataProvider(explicitTrio)) 0s passed
testPedReaderWithSemicolons[36](TestDataProvider(implicitTrio)) 0.001s passed
testPedReaderWithSemicolons[37](TestDataProvider(partialTrio)) 0s passed
testPedReaderWithSemicolons[38](TestDataProvider(bigPedigree)) 0s passed
testPedReaderWithSemicolons[3](TestDataProvider(singleRecordAffected)) 0s passed
testPedReaderWithSemicolons[4](TestDataProvider(singleRecordUnaffected)) 0s passed
testPedReaderWithSemicolons[5](TestDataProvider(singleRecordMissingAffection-9)) 0s passed
testPedReaderWithSemicolons[6](TestDataProvider(singleRecordMissingAffection0)) 0.001s passed
testPedReaderWithSemicolons[7](TestDataProvider(multipleUnrelated)) 0s passed
testPedReaderWithSemicolons[8](TestDataProvider(multipleUnrelatedExtraLine)) 0s passed
testPedReaderWithSemicolons[9](TestDataProvider(explicitTrio)) 0s passed
testPedReader[0](TestDataProvider(singleRecordMale)) 0.003s passed
testPedReader[10](TestDataProvider(implicitTrio)) 0s passed
testPedReader[11](TestDataProvider(partialTrio)) 0s passed
testPedReader[12](TestDataProvider(bigPedigree)) 0.001s passed
testPedReader[1](TestDataProvider(singleRecordFemale)) 0s passed
testPedReader[2](TestDataProvider(singleRecordMissingGender)) 0.001s passed
testPedReader[3](TestDataProvider(singleRecordAffected)) 0s passed
testPedReader[4](TestDataProvider(singleRecordUnaffected)) 0s passed
testPedReader[5](TestDataProvider(singleRecordMissingAffection-9)) 0.001s passed
testPedReader[6](TestDataProvider(singleRecordMissingAffection0)) 0s passed
testPedReader[7](TestDataProvider(multipleUnrelated)) 0s passed
testPedReader[8](TestDataProvider(multipleUnrelatedExtraLine)) 0s passed
testPedReader[9](TestDataProvider(explicitTrio)) 0s passed

Standard error

15:04:31.377 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMale)
15:04:31.378 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: []
15:04:31.379 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordFemale)
15:04:31.379 WARN  PedReader - Reading PED string: "fam1 kid 0 0 2 1" with missing fields: []
15:04:31.379 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingGender)
15:04:31.380 WARN  PedReader - Reading PED string: "fam1 kid 0 0 0 0" with missing fields: []
15:04:31.380 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordAffected)
15:04:31.380 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 2" with missing fields: []
15:04:31.380 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordUnaffected)
15:04:31.380 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: []
15:04:31.380 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection-9)
15:04:31.380 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 -9" with missing fields: []
15:04:31.381 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection0)
15:04:31.381 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 0" with missing fields: []
15:04:31.381 WARN  PedReaderUnitTest - Test TestDataProvider(multipleUnrelated)
15:04:31.381 WARN  PedReader - Reading PED string: "fam1 s1 0 0 1 1
fam2 s2 0 0 2 2" with missing fields: []
15:04:31.381 WARN  PedReaderUnitTest - Test TestDataProvider(multipleUnrelatedExtraLine)
15:04:31.381 WARN  PedReader - Reading PED string: "fam1 s1 0 0 1 1
fam2 s2 0 0 2 2
  
" with missing fields: []
15:04:31.382 WARN  PedReaderUnitTest - Test TestDataProvider(explicitTrio)
15:04:31.382 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2" with missing fields: []
15:04:31.382 WARN  PedReaderUnitTest - Test TestDataProvider(implicitTrio)
15:04:31.382 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2" with missing fields: []
15:04:31.382 WARN  PedReaderUnitTest - Test TestDataProvider(partialTrio)
15:04:31.382 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1" with missing fields: []
15:04:31.382 WARN  PedReaderUnitTest - Test TestDataProvider(bigPedigree)
15:04:31.383 WARN  PedReader - Reading PED string: "fam1 kid dad       mom      1 2
fam1 dad granddad1 grandma1 1 1
fam1 mom granddad2 grandma2 2 2" with missing fields: []
15:04:31.384 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMale)
15:04:31.384 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 1 1" with missing fields: []
15:04:31.385 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordFemale)
15:04:31.385 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 2 1" with missing fields: []
15:04:31.385 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingGender)
15:04:31.385 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 0 0" with missing fields: []
15:04:31.385 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordAffected)
15:04:31.385 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 1 2" with missing fields: []
15:04:31.385 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordUnaffected)
15:04:31.385 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 1 1" with missing fields: []
15:04:31.386 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection-9)
15:04:31.386 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 1 -9" with missing fields: []
15:04:31.386 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection0)
15:04:31.386 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 1 0" with missing fields: []
15:04:31.386 WARN  PedReaderUnitTest - Test TestDataProvider(multipleUnrelated)
15:04:31.386 WARN  PedReader - Reading PED string: "#comment
fam1 s1 0 0 1 1
fam2 s2 0 0 2 2" with missing fields: []
15:04:31.386 WARN  PedReaderUnitTest - Test TestDataProvider(multipleUnrelatedExtraLine)
15:04:31.386 WARN  PedReader - Reading PED string: "#comment
fam1 s1 0 0 1 1
fam2 s2 0 0 2 2
  
" with missing fields: []
15:04:31.387 WARN  PedReaderUnitTest - Test TestDataProvider(explicitTrio)
15:04:31.387 WARN  PedReader - Reading PED string: "#comment
fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2" with missing fields: []
15:04:31.387 WARN  PedReaderUnitTest - Test TestDataProvider(implicitTrio)
15:04:31.387 WARN  PedReader - Reading PED string: "#comment
fam1 kid dad mom 1 2" with missing fields: []
15:04:31.387 WARN  PedReaderUnitTest - Test TestDataProvider(partialTrio)
15:04:31.387 WARN  PedReader - Reading PED string: "#comment
fam1 kid dad mom 1 2
fam1 dad 0   0   1 1" with missing fields: []
15:04:31.388 WARN  PedReaderUnitTest - Test TestDataProvider(bigPedigree)
15:04:31.388 WARN  PedReader - Reading PED string: "#comment
fam1 kid dad       mom      1 2
fam1 dad granddad1 grandma1 1 1
fam1 mom granddad2 grandma2 2 2" with missing fields: []
15:04:31.388 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMale)
15:04:31.388 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 1 1" with missing fields: []
15:04:31.388 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordFemale)
15:04:31.388 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 2 1" with missing fields: []
15:04:31.389 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingGender)
15:04:31.389 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 0 0" with missing fields: []
15:04:31.389 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordAffected)
15:04:31.389 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 1 2" with missing fields: []
15:04:31.390 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordUnaffected)
15:04:31.390 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 1 1" with missing fields: []
15:04:31.390 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection-9)
15:04:31.390 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 1 -9" with missing fields: []
15:04:31.390 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection0)
15:04:31.390 WARN  PedReader - Reading PED string: "#comment
fam1 kid 0 0 1 0" with missing fields: []
15:04:31.390 WARN  PedReaderUnitTest - Test TestDataProvider(multipleUnrelated)
15:04:31.390 WARN  PedReader - Reading PED string: "#comment
fam1 s1 0 0 1 1
fam2 s2 0 0 2 2" with missing fields: []
15:04:31.391 WARN  PedReaderUnitTest - Test TestDataProvider(multipleUnrelatedExtraLine)
15:04:31.391 WARN  PedReader - Reading PED string: "#comment
fam1 s1 0 0 1 1
fam2 s2 0 0 2 2
  
" with missing fields: []
15:04:31.391 WARN  PedReaderUnitTest - Test TestDataProvider(explicitTrio)
15:04:31.391 WARN  PedReader - Reading PED string: "#comment
fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2" with missing fields: []
15:04:31.391 WARN  PedReaderUnitTest - Test TestDataProvider(implicitTrio)
15:04:31.391 WARN  PedReader - Reading PED string: "#comment
fam1 kid dad mom 1 2" with missing fields: []
15:04:31.391 WARN  PedReaderUnitTest - Test TestDataProvider(partialTrio)
15:04:31.392 WARN  PedReader - Reading PED string: "#comment
fam1 kid dad mom 1 2
fam1 dad 0   0   1 1" with missing fields: []
15:04:31.392 WARN  PedReaderUnitTest - Test TestDataProvider(bigPedigree)
15:04:31.392 WARN  PedReader - Reading PED string: "#comment
fam1 kid dad       mom      1 2
fam1 dad granddad1 grandma1 1 1
fam1 mom granddad2 grandma2 2 2" with missing fields: []
15:04:31.392 WARN  PedReaderUnitTest - Test TestDataProvider(missingFam)
15:04:31.393 WARN  PedReaderUnitTest - Test TestDataProvider(missingParents)
15:04:31.393 WARN  PedReaderUnitTest - Test TestDataProvider(missingSex)
15:04:31.393 WARN  PedReaderUnitTest - Test TestDataProvider(missingPhenotype)
15:04:31.393 WARN  PedReaderUnitTest - Test TestDataProvider(missingEverythingButGender)
15:04:31.394 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMale)
15:04:31.394 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: []
15:04:31.394 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordFemale)
15:04:31.394 WARN  PedReader - Reading PED string: "fam1 kid 0 0 2 1" with missing fields: []
15:04:31.394 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingGender)
15:04:31.394 WARN  PedReader - Reading PED string: "fam1 kid 0 0 0 0" with missing fields: []
15:04:31.395 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordAffected)
15:04:31.395 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 2" with missing fields: []
15:04:31.395 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordUnaffected)
15:04:31.395 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: []
15:04:31.395 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection-9)
15:04:31.395 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 -9" with missing fields: []
15:04:31.395 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection0)
15:04:31.395 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 0" with missing fields: []
15:04:31.396 WARN  PedReaderUnitTest - Test TestDataProvider(multipleUnrelated)
15:04:31.396 WARN  PedReader - Reading PED string: "fam1 s1 0 0 1 1;fam2 s2 0 0 2 2" with missing fields: []
15:04:31.396 WARN  PedReaderUnitTest - Test TestDataProvider(multipleUnrelatedExtraLine)
15:04:31.396 WARN  PedReader - Reading PED string: "fam1 s1 0 0 1 1;fam2 s2 0 0 2 2;  ;" with missing fields: []
15:04:31.396 WARN  PedReaderUnitTest - Test TestDataProvider(explicitTrio)
15:04:31.396 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad 0   0   1 1;fam1 mom 0   0   2 2" with missing fields: []
15:04:31.396 WARN  PedReaderUnitTest - Test TestDataProvider(implicitTrio)
15:04:31.396 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2" with missing fields: []
15:04:31.397 WARN  PedReaderUnitTest - Test TestDataProvider(partialTrio)
15:04:31.397 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad 0   0   1 1" with missing fields: []
15:04:31.397 WARN  PedReaderUnitTest - Test TestDataProvider(bigPedigree)
15:04:31.397 WARN  PedReader - Reading PED string: "fam1 kid dad       mom      1 2;fam1 dad granddad1 grandma1 1 1;fam1 mom granddad2 grandma2 2 2" with missing fields: []
15:04:31.397 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMale)
15:04:31.397 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: []
15:04:31.397 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordFemale)
15:04:31.398 WARN  PedReader - Reading PED string: "fam1 kid 0 0 2 1" with missing fields: []
15:04:31.398 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingGender)
15:04:31.398 WARN  PedReader - Reading PED string: "fam1 kid 0 0 0 0" with missing fields: []
15:04:31.398 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordAffected)
15:04:31.398 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 2" with missing fields: []
15:04:31.399 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordUnaffected)
15:04:31.399 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: []
15:04:31.399 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection-9)
15:04:31.399 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 -9" with missing fields: []
15:04:31.399 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection0)
15:04:31.399 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 0" with missing fields: []
15:04:31.400 WARN  PedReaderUnitTest - Test TestDataProvider(multipleUnrelated)
15:04:31.400 WARN  PedReader - Reading PED string: "fam1 s1 0 0 1 1;fam2 s2 0 0 2 2" with missing fields: []
15:04:31.400 WARN  PedReaderUnitTest - Test TestDataProvider(multipleUnrelatedExtraLine)
15:04:31.400 WARN  PedReader - Reading PED string: "fam1 s1 0 0 1 1;fam2 s2 0 0 2 2;  ;" with missing fields: []
15:04:31.400 WARN  PedReaderUnitTest - Test TestDataProvider(explicitTrio)
15:04:31.400 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad 0   0   1 1;fam1 mom 0   0   2 2" with missing fields: []
15:04:31.400 WARN  PedReaderUnitTest - Test TestDataProvider(implicitTrio)
15:04:31.401 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2" with missing fields: []
15:04:31.401 WARN  PedReaderUnitTest - Test TestDataProvider(partialTrio)
15:04:31.401 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad 0   0   1 1" with missing fields: []
15:04:31.401 WARN  PedReaderUnitTest - Test TestDataProvider(bigPedigree)
15:04:31.401 WARN  PedReader - Reading PED string: "fam1 kid dad       mom      1 2;fam1 dad granddad1 grandma1 1 1;fam1 mom granddad2 grandma2 2 2" with missing fields: []
15:04:31.401 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMale)
15:04:31.401 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: []
15:04:31.402 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordFemale)
15:04:31.402 WARN  PedReader - Reading PED string: "fam1 kid 0 0 2 1" with missing fields: []
15:04:31.402 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingGender)
15:04:31.402 WARN  PedReader - Reading PED string: "fam1 kid 0 0 0 0" with missing fields: []
15:04:31.402 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordAffected)
15:04:31.402 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 2" with missing fields: []
15:04:31.402 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordUnaffected)
15:04:31.403 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 1" with missing fields: []
15:04:31.403 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection-9)
15:04:31.403 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 -9" with missing fields: []
15:04:31.403 WARN  PedReaderUnitTest - Test TestDataProvider(singleRecordMissingAffection0)
15:04:31.403 WARN  PedReader - Reading PED string: "fam1 kid 0 0 1 0" with missing fields: []
15:04:31.403 WARN  PedReaderUnitTest - Test TestDataProvider(multipleUnrelated)
15:04:31.403 WARN  PedReader - Reading PED string: "fam1 s1 0 0 1 1;fam2 s2 0 0 2 2" with missing fields: []
15:04:31.404 WARN  PedReaderUnitTest - Test TestDataProvider(multipleUnrelatedExtraLine)
15:04:31.404 WARN  PedReader - Reading PED string: "fam1 s1 0 0 1 1;fam2 s2 0 0 2 2;  ;" with missing fields: []
15:04:31.404 WARN  PedReaderUnitTest - Test TestDataProvider(explicitTrio)
15:04:31.404 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad 0   0   1 1;fam1 mom 0   0   2 2" with missing fields: []
15:04:31.404 WARN  PedReaderUnitTest - Test TestDataProvider(implicitTrio)
15:04:31.404 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2" with missing fields: []
15:04:31.405 WARN  PedReaderUnitTest - Test TestDataProvider(partialTrio)
15:04:31.405 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2;fam1 dad 0   0   1 1" with missing fields: []
15:04:31.405 WARN  PedReaderUnitTest - Test TestDataProvider(bigPedigree)
15:04:31.405 WARN  PedReader - Reading PED string: "fam1 kid dad       mom      1 2;fam1 dad granddad1 grandma1 1 1;fam1 mom granddad2 grandma2 2 2" with missing fields: []