Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
8.787s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.859s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 1.009s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.042s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.040s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 2.344s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.102s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.856s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 1.026s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.110s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.447s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.120s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.345s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.170s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.317s passed

Standard error

23:46:26.441 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--542122060.txt
23:46:27.296 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-803860535.txt
23:46:28.306 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1535387929.txt
23:46:28.348 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1875730732.txt
23:46:28.450 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1892648722.txt
23:46:29.306 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--651982832.txt
23:46:30.332 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2103057892.txt
23:46:30.446 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-6600446.txt
23:46:31.891 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-153359397.txt
23:46:32.011 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2121890416.txt
23:46:32.357 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-2121453.txt
23:46:32.528 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--2100382178.txt
23:46:32.846 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1541852809.txt
23:46:32.887 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1503111927.txt