Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
7.419s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.730s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 0.887s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.036s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.032s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 1.975s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.083s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.724s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 0.853s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.086s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.263s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.107s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.275s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.132s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.236s passed

Standard error

18:01:17.404 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1842924534.txt
18:01:18.133 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1496188252.txt
18:01:19.022 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1896424246.txt
18:01:19.058 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-501715818.txt
18:01:19.145 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1229469733.txt
18:01:19.868 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-937568878.txt
18:01:20.721 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-112686205.txt
18:01:20.808 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--2127435281.txt
18:01:22.072 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1357125840.txt
18:01:22.180 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1009124600.txt
18:01:22.455 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--928980345.txt
18:01:22.589 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1790783726.txt
18:01:22.826 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--271009356.txt
18:01:22.858 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-684458990.txt