Resource
| Id | hg19/scores/FitCons2/E116 |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Cell-type specific FitCons scores for GM12878 Lymphoblastoid Cells (E116) |
| Description |
FitCons2 (Fitness Consequences) scores are measures used to assess the functional significance of genomic regions. These scores are derived from combining various types of functional genomic data to estimate the probability that a given site is under selective pressure. FitCons2 scores range from 0 to 1, with higher scores indicating a higher probability that the site is functionally significant. This particular FitCons2 data was obtained from the GM12878 Lymphoblastoid Cells (E116). The data processing and scoring methodology involves assessing evolutionary conservation and integrating functional genomics data to produce a probabilistic measure of fitness consequence. Downloaded on: 11-04-2024 |
| Labels |
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| FitCons2_E116 | float |
FitCons2_E116 |
GM12878 Lymphoblastoid Cells Score (E116)
Small values desc: less likely to have fitness consequence
Large values desc: more likely to have fitness consequence
|
 |
[0.00473, 0.934] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 2881033286 | 100.00% | 54956599 |
| chr1 | 249250621 | 100.00% | 4669517 |
| chr2 | 243199373 | 100.00% | 3778942 |
| chr3 | 198022430 | 100.00% | 2956850 |
| chr4 | 191154276 | 100.00% | 2208538 |
| chr5 | 180915260 | 100.00% | 2440378 |
| chr6 | 171115067 | 100.00% | 2880722 |
| chr7 | 159138663 | 100.00% | 3357113 |
| chr8 | 146364022 | 100.00% | 2873530 |
| chr9 | 141213431 | 100.00% | 2644523 |
| chr10 | 135534747 | 100.00% | 2925883 |
| chr11 | 135006516 | 100.00% | 3269261 |
| chr12 | 133851895 | 100.00% | 3203387 |
| chr13 | 115169878 | 100.00% | 1742502 |
| chr14 | 107349540 | 100.00% | 2008103 |
| chr15 | 102531392 | 100.00% | 2046686 |
| chr16 | 90354753 | 100.00% | 2139923 |
| chr17 | 81195210 | 100.00% | 2577151 |
| chr18 | 78077248 | 100.00% | 1449184 |
| chr19 | 59128983 | 100.00% | 2413533 |
| chr20 | 63025520 | 100.00% | 1559123 |
| chr21 | 48129895 | 100.00% | 764470 |
| chr22 | 51304566 | 100.00% | 1047280 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 54956599 | 1 | 21045175 | 52.42 | 2 |
Files
| Filename | Size | md5 |
|---|---|---|
| E116-sco.bw | 234.43 MB | c3ed1876fb3f48c326cafd2684bbb502 |
| genomic_resource.yaml | 1.67 KB | 421365d0962406385c5a72788eb42771 |
| statistics/ |