Resource
| Id | hg19/scores/phastCons46/vertebrates |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Conservation score based on the multiple alignment of 46 species using vertebrate species |
| Description |
PhastCons score is a measure used to assess the level of evolutionary conservation of genomic sequences. This score is derived from a method called PHAST (Phylogenetic Analysis with Space/Time models), which uses multiple sequence alignments and phylogenetic trees to identify conserved elements across different species. phastCons46_vertebrates refers to a specific set of PhastCons conservation scores derived from a multiple sequence alignment of the genomes of different species. PhastCons scores typically range from 0 to 1. A score closer to 1 suggests high conservation, implying that the sequence has remained largely unchanged through evolution, likely due to selective pressure to maintain its function. A score closer to 0 indicates low conservation, suggesting that the sequence is less critical or more variable across species. Downloaded on: 07/13/24 https://hgdownload.soe.ucsc.edu/goldenPath/hg19/phastCons46way/vertebrate.phastCons46way.bw |
| Labels |
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| phastCons46_vertebrates | float |
phastCons46_vertebrates |
The score is a number that reflects the conservation at a position.
Small values desc: less conserved
Large values desc: more conserved
|
 |
[0, 1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 2845303719 | 90.70% | 1915310577 |
| chr1 | 222439085 | 89.24% | 149425298 |
| chr1_gl000191_random | 99787 | 93.76% | 77507 |
| chr1_gl000192_random | 526709 | 96.20% | 409673 |
| chr2 | 235414844 | 96.80% | 156056538 |
| chr3 | 192355246 | 97.14% | 128086013 |
| chr4 | 185231636 | 96.90% | 124473841 |
| chr4_ctg9_hap1 | 566665 | 95.98% | 470220 |
| chr4_gl000193_random | 163861 | 86.34% | 126240 |
| chr4_gl000194_random | 173374 | 90.55% | 145288 |
| chr5 | 174858190 | 96.65% | 116613822 |
| chr6 | 165363227 | 96.64% | 110152939 |
| chr6_apd_hap1 | 2285859 | 49.45% | 1878412 |
| chr6_cox_hap2 | 4689975 | 97.80% | 3817663 |
| chr6_dbb_hap3 | 4099876 | 88.93% | 3329913 |
| chr6_mann_hap4 | 3957931 | 84.51% | 3231899 |
| chr6_mcf_hap5 | 3723309 | 77.03% | 3015058 |
| chr6_qbl_hap6 | 4205072 | 91.18% | 3409660 |
| chr6_ssto_hap7 | 4044436 | 82.06% | 3297864 |
| chr7 | 152383393 | 95.76% | 103048369 |
| chr7_gl000195_random | 182152 | 99.59% | 141275 |
| chr8 | 140366498 | 95.90% | 92354581 |
| chr8_gl000196_random | 38607 | 99.21% | 33806 |
| chr8_gl000197_random | 37043 | 99.64% | 25851 |
| chr9 | 118312528 | 83.78% | 80868592 |
| chr9_gl000198_random | 41831 | 46.44% | 33645 |
| chr9_gl000199_random | 12763 | 7.51% | 10039 |
| chr9_gl000200_random | 185595 | 99.23% | 164186 |
| chr9_gl000201_random | 36148 | 100.00% | 21128 |
| chr10 | 129681828 | 95.68% | 85394057 |
| chr11 | 128270883 | 95.01% | 85636944 |
| chr11_gl000202_random | 39589 | 98.72% | 27533 |
| chr12 | 128246738 | 95.81% | 87360449 |
| chr13 | 94786078 | 82.30% | 62302540 |
| chr14 | 87156630 | 81.19% | 59082174 |
| chr15 | 80724076 | 78.73% | 54729120 |
| chr16 | 77481435 | 85.75% | 50719612 |
| chr17 | 77059858 | 94.91% | 51853888 |
| chr17_ctg5_hap1 | 1548513 | 92.13% | 1239289 |
| chr17_gl000203_random | 37366 | 99.65% | 29570 |
| chr17_gl000204_random | 81310 | 100.00% | 47833 |
| chr17_gl000205_random | 141726 | 81.18% | 111232 |
| chr17_gl000206_random | 40985 | 99.96% | 29488 |
| chr18 | 73889016 | 94.64% | 47869537 |
| chr18_gl000207_random | 4257 | 99.88% | 3533 |
| chr19 | 53925902 | 91.20% | 38793744 |
| chr19_gl000208_random | 1130 | 1.22% | 1012 |
| chr19_gl000209_random | 159157 | 99.99% | 127481 |
| chr20 | 58911112 | 93.47% | 38251547 |
| chr21 | 34719668 | 72.14% | 22730262 |
| chr21_gl000210_random | 26952 | 97.36% | 22137 |
| chr22 | 34342858 | 66.94% | 22776604 |
| chrM | 16571 | 100.00% | 10767 |
| chrUn_gl000211 | 159648 | 95.85% | 126459 |
| chrUn_gl000212 | 181269 | 97.01% | 138586 |
| chrUn_gl000213 | 163102 | 99.31% | 137803 |
| chrUn_gl000214 | 131154 | 95.23% | 109762 |
| chrUn_gl000215 | 171112 | 99.17% | 140107 |
| chrUn_gl000216 | 47668 | 27.67% | 36930 |
| chrUn_gl000217 | 170959 | 99.31% | 137249 |
| chrUn_gl000218 | 154445 | 95.84% | 129781 |
| chrUn_gl000219 | 138835 | 77.48% | 108835 |
| chrUn_gl000220 | 155530 | 96.12% | 110713 |
| chrUn_gl000221 | 145793 | 93.82% | 118456 |
| chrUn_gl000222 | 184243 | 98.60% | 156931 |
| chrUn_gl000223 | 172784 | 95.75% | 142920 |
| chrUn_gl000224 | 89548 | 49.83% | 76199 |
| chrUn_gl000225 | 101799 | 48.21% | 77723 |
| chrUn_gl000227 | 124473 | 96.96% | 105816 |
| chrUn_gl000228 | 113970 | 88.27% | 98956 |
| chrUn_gl000229 | 19533 | 98.09% | 14581 |
| chrUn_gl000230 | 25989 | 59.48% | 22500 |
| chrUn_gl000231 | 27208 | 99.35% | 22067 |
| chrUn_gl000232 | 37363 | 91.91% | 31149 |
| chrUn_gl000233 | 27024 | 58.82% | 23507 |
| chrUn_gl000234 | 40487 | 99.89% | 33592 |
| chrUn_gl000235 | 31766 | 92.14% | 24349 |
| chrUn_gl000236 | 38687 | 92.26% | 33327 |
| chrUn_gl000237 | 42612 | 92.90% | 37008 |
| chrUn_gl000238 | 39813 | 99.68% | 32691 |
| chrUn_gl000239 | 31016 | 91.70% | 26196 |
| chrUn_gl000240 | 41620 | 99.25% | 36934 |
| chrUn_gl000241 | 42152 | 100.00% | 34028 |
| chrUn_gl000242 | 43523 | 100.00% | 32595 |
| chrUn_gl000243 | 38808 | 89.54% | 32403 |
| chrUn_gl000244 | 39772 | 99.61% | 34453 |
| chrUn_gl000245 | 36651 | 100.00% | 28859 |
| chrUn_gl000246 | 37184 | 97.46% | 31858 |
| chrUn_gl000247 | 33787 | 92.77% | 28696 |
| chrUn_gl000248 | 39645 | 99.65% | 30275 |
| chrUn_gl000249 | 38502 | 100.00% | 26490 |
| chrX | 143108632 | 92.17% | 100957799 |
| chrY | 21946335 | 36.96% | 17912321 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 1915310577 | 1 | 1536 | 1.49 | 1 |
Files
| Filename | Size | md5 |
|---|---|---|
| genomic_resource.yaml | 1.98 KB | f867fb6e4b024d784cc6758f840f7365 |
| vertebrate.phastCons46way.bw | 20.18 GB | 01711929fd19722ec35718a65538c9e6 |
| statistics/ |